SRR2933919.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933919.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1369011
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTC	6556	0.4788858526337626	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGC	6540	0.4777171257206845	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCG	5638	0.41183014599590506	No Hit
CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	3921	0.2864111391362085	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	3720	0.27172900729066457	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT	3454	0.2522989223607407	TruSeq Adapter, Index 14 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2946	0.21519184287051019	No Hit
TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC	2442	0.17837694510854915	TruSeq Adapter, Index 15 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCT	1562	0.11409696488925217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAACGG	25	3.8911978E-5	45.0	2
GTTCACG	40	6.8175723E-9	45.0	1
ACCCGTA	20	7.03376E-4	45.0	11
TATTGCG	50	1.0822987E-9	40.5	1
TTGTTCG	325	0.0	40.153847	1
CGTTTTT	1690	0.0	39.27515	1
TTGGGAC	2755	0.0	38.87477	5
TTTGGGA	8000	0.0	38.75625	4
GGCGATA	70	0.0	38.57143	8
GGGCGAT	2355	0.0	38.21656	7
TCGTTCA	130	0.0	38.07692	16
TTGGGAT	4180	0.0	37.948563	5
TTCTTCG	405	0.0	37.777775	1
TTTTGCG	1150	0.0	37.565216	1
CGCATCG	30	1.1400361E-4	37.499996	21
CTTTGCG	480	0.0	37.499996	1
ATAACGC	30	1.1400361E-4	37.499996	11
TTGGGAG	5395	0.0	37.451344	5
TCGTTTG	455	0.0	37.08791	1
GGCGATT	1245	0.0	37.048195	8