SRR2933918.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933918.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	991273
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	3796	0.38294193426028955	No Hit
TCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3591	0.36226145572410423	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3542	0.3573183169520404	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3283	0.3311902977282747	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	3189	0.32170754171656046	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1902	0.19187448866255816	No Hit
TCCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTG	1478	0.14910120622674078	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTC	1010	0.1018891869343763	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGACGT	25	3.8904152E-5	45.000004	12
CCCGCGG	25	3.8904152E-5	45.000004	2
TCGTTAG	35	1.2117016E-7	45.0	1
GCAACGC	20	7.032816E-4	45.0	37
CCGGATA	20	7.032816E-4	45.0	20
GACGGCG	45	3.8380676E-10	45.0	9
CGATCGT	20	7.032816E-4	45.0	10
GTACGAA	20	7.032816E-4	45.0	9
CGCACGG	30	2.1651995E-6	44.999996	2
CGTTTTT	2240	0.0	43.292408	1
ATGGGCG	90	0.0	40.0	5
GTTTACG	45	1.927765E-8	40.0	1
TATTGCG	90	0.0	40.0	1
TACGGGT	40	3.4575714E-7	39.375	4
TTACACG	180	0.0	38.75	34
TTCGCAG	35	6.247423E-6	38.571426	1
AATCGTG	35	6.247423E-6	38.571426	10
GCGAGGC	35	6.247423E-6	38.571426	9
TTTGTCG	345	0.0	38.47826	1
TTTCGCG	305	0.0	38.360657	1