SRR2933917.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933917.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	627134
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	3354	0.5348139313129252	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	2934	0.4678425982325946	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG	2326	0.3708936208210686	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1967	0.31364907659288127	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1753	0.2795255878329033	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	1738	0.27713375450860583	Illumina Single End Adapter 2 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1363	0.21733792140116787	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	793	0.12644825507786214	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT	784	0.12501315508328364	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTAT	30	2.163917E-6	45.000004	28
TTTAGCG	25	3.8887716E-5	45.0	1
CGAACTA	20	7.030833E-4	45.0	18
CGTATCG	20	7.030833E-4	45.0	33
CTATCGA	25	3.8887716E-5	45.0	34
TTGTCGT	20	7.030833E-4	45.0	29
TACGGTG	20	7.030833E-4	45.0	1
CGTTCGG	25	3.8887716E-5	45.0	2
CCCCGAT	25	3.8887716E-5	45.0	40
CGTAATA	20	7.030833E-4	45.0	31
CCAACGT	20	7.030833E-4	45.0	19
CGGTAGA	25	3.8887716E-5	45.0	24
CCTATCG	25	3.8887716E-5	45.0	33
TCGACAT	25	3.8887716E-5	45.0	37
TATCGGT	20	7.030833E-4	45.0	35
TGTAACG	20	7.030833E-4	45.0	13
CGATATA	25	3.8887716E-5	45.0	20
AGTACGA	20	7.030833E-4	45.0	13
GTAACGA	20	7.030833E-4	45.0	14
CGCCAAT	20	7.030833E-4	45.0	16