##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933914.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1311613 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.391087157568585 33.0 31.0 34.0 31.0 34.0 2 32.62605890609501 34.0 31.0 34.0 31.0 34.0 3 32.66061025622649 34.0 31.0 34.0 31.0 34.0 4 36.06253597669434 37.0 35.0 37.0 35.0 37.0 5 36.114538358494464 37.0 35.0 37.0 35.0 37.0 6 35.7727027713205 37.0 35.0 37.0 35.0 37.0 7 36.09820732182435 37.0 35.0 37.0 35.0 37.0 8 36.11826887961617 37.0 37.0 37.0 35.0 37.0 9 37.98622002069208 39.0 39.0 39.0 37.0 39.0 10 37.56835667228062 39.0 37.0 39.0 35.0 39.0 11 37.47197534638647 39.0 37.0 39.0 35.0 39.0 12 37.4328532882794 39.0 37.0 39.0 35.0 39.0 13 37.445433218487466 39.0 37.0 39.0 35.0 39.0 14 38.69914982544394 40.0 38.0 41.0 35.0 41.0 15 38.73269706841881 40.0 38.0 41.0 35.0 41.0 16 38.775766937351186 40.0 38.0 41.0 35.0 41.0 17 38.751592886011345 40.0 38.0 41.0 35.0 41.0 18 38.70240840857784 40.0 38.0 41.0 35.0 41.0 19 38.71402768957002 40.0 38.0 41.0 35.0 41.0 20 38.657360822132745 40.0 38.0 41.0 35.0 41.0 21 38.57220308124424 40.0 38.0 41.0 35.0 41.0 22 38.575391521736975 40.0 38.0 41.0 35.0 41.0 23 38.508849027876366 40.0 38.0 41.0 34.0 41.0 24 38.48845657979907 40.0 38.0 41.0 34.0 41.0 25 38.41309593607261 40.0 38.0 41.0 34.0 41.0 26 38.34346869084097 40.0 38.0 41.0 34.0 41.0 27 38.35008954623048 40.0 38.0 41.0 34.0 41.0 28 38.29157304784262 40.0 38.0 41.0 34.0 41.0 29 38.26005689178134 40.0 37.0 41.0 34.0 41.0 30 38.170847650945824 40.0 37.0 41.0 34.0 41.0 31 38.091472865852964 40.0 37.0 41.0 34.0 41.0 32 37.984206469438774 40.0 37.0 41.0 34.0 41.0 33 37.915882962428704 40.0 37.0 41.0 34.0 41.0 34 37.89973719382165 40.0 37.0 41.0 34.0 41.0 35 37.8572490513589 40.0 37.0 41.0 33.0 41.0 36 37.7780473356089 40.0 37.0 41.0 33.0 41.0 37 37.71688981429736 40.0 37.0 41.0 33.0 41.0 38 37.6439597655711 40.0 37.0 41.0 33.0 41.0 39 37.55471392857497 40.0 37.0 41.0 33.0 41.0 40 37.4744920948481 40.0 36.0 41.0 33.0 41.0 41 37.43243167001242 40.0 36.0 41.0 33.0 41.0 42 37.44658142302646 40.0 36.0 41.0 33.0 41.0 43 37.36414552158297 40.0 36.0 41.0 33.0 41.0 44 37.244132224977946 40.0 36.0 41.0 32.0 41.0 45 37.25004402975573 40.0 36.0 41.0 32.0 41.0 46 37.158802177166585 39.0 36.0 41.0 32.0 41.0 47 37.09256465131102 39.0 35.0 41.0 32.0 41.0 48 37.03810880191032 39.0 35.0 41.0 32.0 41.0 49 37.023519132549005 39.0 35.0 41.0 32.0 41.0 50 36.949850298830526 39.0 35.0 41.0 32.0 41.0 51 36.0580956425409 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 23.0 10 16.0 11 29.0 12 24.0 13 18.0 14 24.0 15 18.0 16 29.0 17 67.0 18 121.0 19 229.0 20 432.0 21 751.0 22 1260.0 23 1890.0 24 3061.0 25 5000.0 26 7303.0 27 8490.0 28 9217.0 29 11077.0 30 13567.0 31 17606.0 32 23759.0 33 34171.0 34 60379.0 35 82889.0 36 92312.0 37 151964.0 38 306652.0 39 478982.0 40 247.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.628016038267383 4.765658772823996 58.70092778891335 13.905397399995273 2 20.680566600056572 4.172496003013084 53.10354502433263 22.043392372597708 3 19.19171279943093 4.350063623950053 53.55360155777657 22.90462201884245 4 18.086584991152115 4.372555014322059 53.05558880553944 24.485271188986385 5 18.262551530062602 5.647168791404171 52.037910572707034 24.052369105826184 6 20.820394430369323 6.250090537376497 54.4565355787111 18.472979453543083 7 83.10126538849492 1.855120374683691 10.114950065301274 4.928664171520106 8 85.00449446597433 2.0918517885992287 7.768831202496468 5.134822542929965 9 79.75294541911371 4.778467429035851 10.089713962883868 5.378873188966563 10 36.35454970330425 29.296065226556916 19.048072869055126 15.301312201083702 11 24.093234818502104 26.87515296051503 28.326038244512674 20.70557397647019 12 21.865443541654436 23.313812839610463 32.82355389890158 21.997189719833518 13 22.576705171418705 24.179769489933385 33.62409491214253 19.61943042650538 14 20.34723657054329 26.089555379521244 31.99358347317387 21.56962457676159 15 17.93112755058085 27.04768860936877 33.786490374828546 21.23469346522183 16 19.827723573950546 27.027560721035854 30.85002969625949 22.294686008754105 17 20.12544858887492 26.68142203531072 29.40539625636525 23.787733119449108 18 20.44627493018139 25.48320274349217 31.75830065728229 22.312221669044146 19 21.80795707270361 27.65244016337136 29.591579223444718 20.94802354048031 20 23.204024357794562 27.52290500322885 29.787978618693167 19.485092020283425 21 23.484976132441503 27.49301813873452 30.048726263005932 18.973279465818045 22 22.037293012496825 25.138283929787214 29.318251648923884 23.506171408792078 23 20.343043260473937 26.80135070329434 28.362329437112926 24.493276599118797 24 21.141373255678314 25.639803814082356 29.65966333057083 23.5591595996685 25 19.99461731471097 27.4914932987093 27.942236010164585 24.57165337641515 26 19.35997889621405 28.16516762185187 29.40859842041822 23.066255061515857 27 19.49591838446249 27.203984711953904 29.657071102527954 23.643025801055646 28 17.567300720563154 26.2497398241707 30.608952488272074 25.574006966994073 29 17.637367119722054 25.695994169011744 30.977658806370478 25.688979904895724 30 19.528473719000957 27.811480978001896 29.05933381264138 23.60071149035577 31 19.380640478555794 29.975305215791547 26.733190354166968 23.910863951485688 32 19.5640024915886 29.92879759502231 26.958409225892087 23.548790687496997 33 19.79722677344613 28.383448471462238 25.907641964512397 25.91168279057923 34 18.717640035589767 27.6392502971532 27.643519849223818 25.999589818033215 35 18.472750727539296 26.55790999326783 27.977459814747185 26.991879464445685 36 18.911218476791554 27.27389862711028 27.317051599824033 26.49783129627413 37 17.986174275491322 28.26527336950762 27.540288179516363 26.20826417548469 38 18.84427799968436 29.867117816002132 26.154971016603216 25.133633167710297 39 18.97533799985209 29.701520189263142 27.48912979667021 23.834012014214558 40 20.67904176003135 28.83312379489987 27.605017638586993 22.88281680648179 41 20.017566157090545 27.151072763078744 26.982806666295623 25.84855441353509 42 20.845325564781685 24.865947501282772 26.930275927426763 27.358451006508776 43 20.083972940188914 24.38684276535838 27.903657557526497 27.625526736926215 44 18.76330899434513 25.944238125117696 27.10852972637508 28.183923154162088 45 19.92660944958612 25.42007436644803 26.73989965027794 27.913416533687908 46 20.45900734439198 26.052959218915944 28.161889215797647 25.326144220894424 47 18.049455136537986 26.396505676598203 29.503367227985695 26.050671958878112 48 17.92845908053671 25.652383744290425 28.78349025207893 27.635666923093932 49 19.414873137122 24.806250014295376 29.500012579930207 26.278864268652413 50 19.58352044391143 25.127991259616977 27.41509881344573 27.87338948302586 51 18.709634625457355 24.635239205466856 25.88286331410256 30.772262854973224 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 183.0 1 422.5 2 662.0 3 2889.0 4 5116.0 5 3520.5 6 1925.0 7 2124.5 8 2324.0 9 2553.0 10 2782.0 11 2907.5 12 3033.0 13 3204.5 14 3376.0 15 3162.0 16 2948.0 17 2965.5 18 2983.0 19 3087.5 20 3192.0 21 3584.0 22 3976.0 23 4188.0 24 4400.0 25 5452.5 26 8497.5 27 10490.0 28 11660.5 29 12831.0 30 16297.0 31 19763.0 32 22144.0 33 24525.0 34 29787.5 35 35050.0 36 39196.0 37 43342.0 38 48389.5 39 53437.0 40 60847.5 41 68258.0 42 78416.5 43 88575.0 44 99066.5 45 109558.0 46 126534.0 47 143510.0 48 160579.0 49 177648.0 50 167860.5 51 158073.0 52 130249.0 53 102425.0 54 85157.5 55 67890.0 56 56837.0 57 45784.0 58 40170.5 59 34557.0 60 30343.0 61 26129.0 62 22413.0 63 18697.0 64 15007.0 65 11317.0 66 9084.0 67 6851.0 68 5497.0 69 4143.0 70 3276.0 71 2409.0 72 1866.0 73 1323.0 74 1115.5 75 633.5 76 359.0 77 280.0 78 201.0 79 122.0 80 43.0 81 43.0 82 43.0 83 48.0 84 53.0 85 32.0 86 11.0 87 6.5 88 2.0 89 1.0 90 0.0 91 1.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1311613.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.49584385940507 #Duplication Level Percentage of deduplicated Percentage of total 1 70.03803859966294 24.860592823526208 2 13.114770084001037 9.31039662307395 3 5.14003175669254 5.473492940038258 4 2.526225252749826 3.586819885011758 5 1.5253360812786694 2.7071545687092224 6 1.0028298937558104 2.1357775995780015 7 0.7218662441727018 1.7936276043370578 8 0.5627039329708164 1.597892075504419 9 0.46029580293313044 1.4704729155048497 >10 4.679934521680973 35.54501609945513 >50 0.16241738917666138 3.733329474363784 >100 0.05947291739533005 3.7816145408347426 >500 0.0032558161765708213 0.8266960163406155 >1k 0.0021705441177138807 1.652390443845031 >5k 6.511632353141643E-4 1.5247263898770533 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC 7537 0.5746359635044788 RNA PCR Primer, Index 13 (95% over 24bp) CTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGCT 6796 0.5181406405700463 RNA PCR Primer, Index 13 (96% over 25bp) TCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC 5457 0.41605260088151 Illumina Single End Adapter 1 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTGC 4203 0.32044513130016244 Illumina Single End Adapter 1 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3177 0.24222083800633265 No Hit CGCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTG 2747 0.2094367774640843 RNA PCR Primer, Index 13 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTG 2412 0.183895707041635 RNA PCR Primer, Index 13 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCC 1669 0.12724790010468026 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTC 1653 0.12602802808450358 No Hit TTCCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCT 1594 0.12152975001010206 Illumina Single End Adapter 1 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCTCCAAAGCTCGTATGCCGTCTTCTG 1541 0.11748892394326681 Illumina Single End Adapter 1 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.287260037831281E-4 0.0 0.0 0.546426423037893 0.0 2 2.287260037831281E-4 0.0 0.0 1.9627740804642833 0.0 3 2.287260037831281E-4 0.0 0.0 2.910004704131478 0.0 4 2.287260037831281E-4 0.0 0.0 3.9217360608655145 0.0 5 2.287260037831281E-4 0.0 0.0 5.443221438030883 0.0 6 2.287260037831281E-4 0.0 0.0 6.532338426044878 0.0 7 2.287260037831281E-4 0.0 0.0 7.428486908867174 0.0 8 2.287260037831281E-4 0.0 0.0 8.844529598288519 0.0 9 2.287260037831281E-4 0.0 0.0 9.474517254708516 0.0 10 2.287260037831281E-4 0.0 0.0 10.68432533071874 0.0 11 2.287260037831281E-4 0.0 0.0 13.2009975503445 0.0 12 2.287260037831281E-4 0.0 0.0 15.405839984812593 0.0 13 2.287260037831281E-4 0.0 0.0 16.154155227189726 0.0 14 2.287260037831281E-4 0.0 0.0 16.40377153931838 0.0 15 2.287260037831281E-4 0.0 0.0 16.74144736290354 0.0 16 2.287260037831281E-4 0.0 0.0 17.56120136046227 0.0 17 2.287260037831281E-4 0.0 0.0 18.85899270592774 0.0 18 2.287260037831281E-4 0.0 0.0 20.244386110842147 0.0 19 2.287260037831281E-4 0.0 0.0 21.266943831755253 0.0 20 2.287260037831281E-4 0.0 0.0 22.293237410730146 0.0 21 3.049680050441708E-4 0.0 0.0 23.787885603451628 0.0 22 3.049680050441708E-4 0.0 0.0 25.423810224509822 0.0 23 3.049680050441708E-4 0.0 0.0 27.067054077689075 0.0 24 3.049680050441708E-4 0.0 0.0 28.233251728977983 0.0 25 3.049680050441708E-4 0.0 0.0 29.27121033414582 0.0 26 3.049680050441708E-4 0.0 0.0 30.13617583845235 0.0 27 3.049680050441708E-4 0.0 0.0 30.987875234539455 0.0 28 3.049680050441708E-4 0.0 0.0 31.93213242015747 0.0 29 3.049680050441708E-4 0.0 0.0 32.9655927472509 0.0 30 3.049680050441708E-4 0.0 0.0 34.012776634571324 0.0 31 3.049680050441708E-4 0.0 0.0 35.02061964924105 0.0 32 3.049680050441708E-4 0.0 0.0 35.96312326883006 0.0 33 3.049680050441708E-4 0.0 0.0 36.87520632991591 0.0 34 3.049680050441708E-4 0.0 0.0 37.76998245671551 0.0 35 3.049680050441708E-4 0.0 0.0 38.70425194016833 0.0 36 3.049680050441708E-4 0.0 0.0 39.59422482088848 0.0 37 3.049680050441708E-4 0.0 0.0 40.49426164577509 0.0 38 3.049680050441708E-4 0.0 0.0 41.375314212347696 0.0 39 3.049680050441708E-4 0.0 0.0 42.25293588886356 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTACGC 20 7.033651E-4 45.0 19 ATCCCCG 20 7.033651E-4 45.0 38 ATACGGA 25 3.891108E-5 45.0 4 TAGTGCG 20 7.033651E-4 45.0 15 CGTTTTT 2230 0.0 41.97309 1 GGATCGA 70 0.0 41.785713 8 GCGCGAC 105 0.0 40.714287 9 TCTTGCG 430 0.0 40.290695 1 TTTCGCG 415 0.0 40.12048 1 CTATGCG 40 3.4587174E-7 39.375 1 GTCTTCG 160 0.0 39.375 1 TACGGGT 75 0.0 39.0 4 TGGGCGA 1670 0.0 38.937126 6 TTTGTCG 330 0.0 38.863636 1 CGCGACC 110 0.0 38.863636 10 TTTAGCG 70 0.0 38.571426 1 TTCCGAT 35 6.2489653E-6 38.571426 13 TACGGGA 280 0.0 38.571426 4 ATCGCGG 70 0.0 38.571426 2 TTTGGGC 3200 0.0 38.25 4 >>END_MODULE