SRR2933912.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933912.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	964413
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	5499	0.5701914014016816	TruSeq Adapter, Index 14 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	5208	0.5400176065648223	TruSeq Adapter, Index 21 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	4928	0.5109844019107996	TruSeq Adapter, Index 21 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	4471	0.4635980643147697	TruSeq Adapter, Index 21 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	1844	0.1912043906500638	TruSeq Adapter, Index 14 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1843	0.1911007006334423	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1525	0.15812727534780224	No Hit
CGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	1318	0.13666344190714974	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1232	0.1277461004776999	No Hit
GCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	1231	0.1276424104610784	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCT	1076	0.1115704578847444	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	1067	0.11063724773515081	No Hit
TGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG	1011	0.10483060680434628	TruSeq Adapter, Index 14 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCTCG	100	0.0	45.000004	1
CGTATAG	25	3.8903367E-5	45.000004	44
CACGGGT	30	2.1651376E-6	45.000004	4
TCTAGCG	50	2.1827873E-11	45.000004	1
TGTTACG	30	2.1651376E-6	45.000004	1
ATACCCG	25	3.8903367E-5	45.000004	32
CGAACTT	20	7.0327224E-4	45.0	11
TCGCAAA	20	7.0327224E-4	45.0	31
CAAACGC	20	7.0327224E-4	45.0	23
CGAACAC	20	7.0327224E-4	45.0	26
CGACGTT	20	7.0327224E-4	45.0	27
TGGACGC	20	7.0327224E-4	45.0	33
ATTACGA	20	7.0327224E-4	45.0	10
CCCAGCG	45	3.8380676E-10	45.0	23
TTATCCG	35	1.2116652E-7	45.0	1
ACCGTTG	20	7.0327224E-4	45.0	11
GCGGAAT	20	7.0327224E-4	45.0	5
TCGAGCG	55	1.8189894E-12	45.0	18
CGTCCCG	20	7.0327224E-4	45.0	42
TCGACGT	20	7.0327224E-4	45.0	26