##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933912.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 964413 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.345115629922034 33.0 31.0 34.0 31.0 34.0 2 32.570552242659524 34.0 31.0 34.0 31.0 34.0 3 32.641397409616005 34.0 31.0 34.0 31.0 34.0 4 36.03256177591965 37.0 35.0 37.0 35.0 37.0 5 36.073798258629864 37.0 35.0 37.0 35.0 37.0 6 35.71537194127412 37.0 35.0 37.0 35.0 37.0 7 36.03646674194562 37.0 35.0 37.0 35.0 37.0 8 36.056665557183486 37.0 35.0 37.0 35.0 37.0 9 37.96306354227909 39.0 39.0 39.0 35.0 39.0 10 37.52833485239208 39.0 37.0 39.0 35.0 39.0 11 37.44528122287858 39.0 37.0 39.0 35.0 39.0 12 37.14043257401134 39.0 37.0 39.0 34.0 39.0 13 36.964296416576715 39.0 35.0 39.0 33.0 39.0 14 37.71330021474203 40.0 37.0 41.0 32.0 41.0 15 37.915912581020784 40.0 37.0 41.0 33.0 41.0 16 38.14416437770955 40.0 37.0 41.0 33.0 41.0 17 38.218194901976645 40.0 37.0 41.0 34.0 41.0 18 38.229923279756704 40.0 37.0 41.0 34.0 41.0 19 38.24980584044388 40.0 37.0 41.0 34.0 41.0 20 38.135748895960546 40.0 36.0 41.0 33.0 41.0 21 38.062800895466985 40.0 36.0 41.0 34.0 41.0 22 38.148335827078235 40.0 36.0 41.0 34.0 41.0 23 38.1337030919326 40.0 36.0 41.0 34.0 41.0 24 38.1195514784641 40.0 36.0 41.0 34.0 41.0 25 37.99164051085997 40.0 36.0 41.0 34.0 41.0 26 37.89531248541859 40.0 36.0 41.0 34.0 41.0 27 37.90193724058054 40.0 36.0 41.0 34.0 41.0 28 37.85082739448763 40.0 36.0 41.0 34.0 41.0 29 37.82614191223055 40.0 36.0 41.0 34.0 41.0 30 37.772905383896735 40.0 36.0 41.0 34.0 41.0 31 37.64796824596931 40.0 36.0 41.0 33.0 41.0 32 37.57194479958275 40.0 35.0 41.0 33.0 41.0 33 37.55799019714583 40.0 35.0 41.0 33.0 41.0 34 37.534030545005095 40.0 35.0 41.0 33.0 41.0 35 37.471184025930796 40.0 35.0 41.0 33.0 41.0 36 37.36162722816884 40.0 35.0 41.0 33.0 41.0 37 37.25074319819414 39.0 35.0 41.0 32.0 41.0 38 37.19956906429092 39.0 35.0 41.0 32.0 41.0 39 37.18038641121594 39.0 35.0 41.0 32.0 41.0 40 37.0480043300951 39.0 35.0 41.0 32.0 41.0 41 36.886630520326875 39.0 35.0 41.0 31.0 41.0 42 36.8923780579482 39.0 35.0 41.0 31.0 41.0 43 36.837487673849274 39.0 35.0 41.0 31.0 41.0 44 36.74346260367705 39.0 35.0 41.0 31.0 41.0 45 36.763544249196144 39.0 35.0 41.0 31.0 41.0 46 36.64834360382948 39.0 35.0 40.0 31.0 41.0 47 36.53567299486838 39.0 35.0 40.0 31.0 41.0 48 36.47087917728193 38.0 35.0 40.0 31.0 41.0 49 36.48313948484726 38.0 35.0 40.0 31.0 41.0 50 36.38629300932277 38.0 35.0 40.0 31.0 41.0 51 35.24223128472968 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 18.0 10 36.0 11 20.0 12 13.0 13 12.0 14 8.0 15 19.0 16 55.0 17 80.0 18 136.0 19 234.0 20 412.0 21 708.0 22 1155.0 23 1664.0 24 2586.0 25 3924.0 26 5310.0 27 6370.0 28 7658.0 29 9615.0 30 12565.0 31 17278.0 32 23449.0 33 36704.0 34 73103.0 35 73453.0 36 65461.0 37 106373.0 38 211237.0 39 304573.0 40 181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.939536277507663 4.6951876426385795 58.383182308824125 12.982093771029632 2 19.468319070771546 4.254816142047027 55.17864234513637 21.09822244204506 3 20.71581366074493 4.020165634432551 52.968800710898755 22.295219993923766 4 19.485013163447608 4.733034498705431 51.92059833287191 23.86135400497505 5 17.948741877183323 5.274711145536197 52.35194880201739 24.42459817526309 6 20.47359378191708 6.345206877136662 54.82070440775891 18.360494933187336 7 82.84127235945597 1.7800465153414564 10.217821617916806 5.160859507285779 8 86.063543315986 2.11133611844718 6.770439635301473 5.054680930265353 9 81.6768334727964 3.841092975727204 9.553064921356306 4.929008630120083 10 40.03730766798042 23.099543452856818 19.756058866896236 17.10709001226653 11 31.789803745905544 25.1164179661618 23.956956200300077 19.13682208763258 12 28.78911835489567 20.75065350632976 29.89735725254637 20.5628708862282 13 27.43461566776889 23.512333409027043 30.00177309928423 19.051277823919836 14 20.742047234950174 24.79860806521687 34.083737983623195 20.375606716209756 15 18.713455749766958 24.22406168311709 36.15587927578745 20.90660329132851 16 23.135627578641103 23.649100540950815 30.024895972990823 23.190375907417256 17 24.233186404579783 24.14453144036839 26.518203300867988 25.104078854183843 18 25.169818324721877 22.35546389358086 30.86063750696019 21.61408027473707 19 25.06695782823334 24.853978534092757 28.36658153716302 21.71248210051088 20 22.389681599065963 30.172239486609993 28.67516302662863 18.762915887695417 21 21.812854036600502 27.33351790156292 32.302550878098906 18.55107718373767 22 19.921340753390922 23.491491715686124 32.907478435068796 23.67968909585416 23 19.168965992785246 25.32618286978711 31.37556212950261 24.129289007925028 24 20.817740947083873 27.0133231302357 28.89477848183299 23.274157440847436 25 22.104845123406676 27.172487305749716 26.31714835863888 24.40551921220473 26 18.619201524658006 28.037054664339863 27.119605397272746 26.224138413729385 27 19.87996843675894 26.508352749288942 30.660101014814195 22.95157779913792 28 16.598386790721403 26.583320631306297 30.520326872408397 26.297965705563904 29 18.54340412250768 27.708668381699542 29.920272746219723 23.827654749573057 30 23.955504540067377 25.886731099642997 28.301049446658226 21.8567149136314 31 22.45210298907211 28.230332855322356 28.491009557108832 20.826554598496703 32 23.558993916506722 28.814937169034426 25.02797038198365 22.598098532475195 33 23.845385742415335 25.659235203175403 25.24893380740409 25.246445247005173 34 18.974236141570053 25.86578571628545 29.67566799700958 25.484310145134913 35 19.118261574657332 29.340127103222375 26.188469048011587 25.35314227410871 36 24.521859410854063 27.825734410465223 24.54041992382931 23.111986254851395 37 20.658680461586478 30.608878146603168 27.06413123838024 21.668310153430117 38 19.913149242077825 28.660542734285 27.752736638763682 23.673571384873494 39 19.288727961983092 23.88706912909718 28.511851250449755 28.31235165846997 40 23.990344385652204 23.585953320828317 27.929735497136598 24.493966796382878 41 21.18698109627307 25.56093706741821 25.066750448200096 28.18533138810862 42 19.84077361047601 25.69397135874361 27.784154713800003 26.681100316980384 43 20.136082777814067 24.130014838041376 28.990173297124777 26.743729087019773 44 20.62041884545314 24.235882345011937 27.47775071468344 27.66594809485148 45 20.838375260391555 23.53244927225162 25.651976902011896 29.97719856534493 46 21.298136794091327 24.827019129771166 28.29420590556121 25.580638170576297 47 18.074414177328592 26.523802561765553 31.249786139340717 24.151997121565138 48 17.94729021695062 28.232406655654785 29.066178079308347 24.754125048086244 49 21.629737467246915 23.51326661917664 30.3969357526288 24.460060160947645 50 21.00645677733502 23.63489500867367 26.93648882791916 28.42215938607215 51 18.823470857402377 24.47748008374006 24.323396719040495 32.375652339817066 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 132.0 1 288.0 2 444.0 3 1180.0 4 1916.0 5 1334.5 6 753.0 7 818.0 8 883.0 9 1063.0 10 1243.0 11 1272.5 12 1302.0 13 1282.5 14 1263.0 15 1250.5 16 1238.0 17 1368.5 18 1499.0 19 1449.0 20 1399.0 21 1507.5 22 1616.0 23 1868.5 24 2121.0 25 2782.0 26 4393.0 27 5343.0 28 6445.0 29 7547.0 30 8693.5 31 9840.0 32 12082.5 33 14325.0 34 17413.5 35 20502.0 36 22888.5 37 25275.0 38 29259.5 39 33244.0 40 39639.0 41 46034.0 42 52907.0 43 59780.0 44 68856.0 45 77932.0 46 91594.0 47 105256.0 48 123861.5 49 142467.0 50 135421.5 51 128376.0 52 108172.5 53 87969.0 54 74022.5 55 60076.0 56 51748.5 57 43421.0 58 36732.5 59 30044.0 60 24422.0 61 18800.0 62 14998.5 63 11197.0 64 9137.0 65 7077.0 66 5519.0 67 3961.0 68 3425.0 69 2889.0 70 2284.0 71 1679.0 72 1335.5 73 992.0 74 791.0 75 421.5 76 253.0 77 218.5 78 184.0 79 128.5 80 73.0 81 42.5 82 12.0 83 16.0 84 20.0 85 11.5 86 3.0 87 1.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 964413.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.68615175811356 #Duplication Level Percentage of deduplicated Percentage of total 1 65.96240832931916 19.581700639948224 2 13.635230079308622 8.095550187823012 3 5.939099808709547 5.289270546838045 4 3.1375332727680734 3.725651555260949 5 1.9863073000564386 2.9482909973862124 6 1.3371367767561895 2.381666716568343 7 0.9548666556757861 1.9842421514407627 8 0.7297396374025314 1.7330529295873847 9 0.5722408896567306 1.5288866903292855 >10 5.166602043431749 34.08614509230637 >50 0.4600365725416158 8.609904185848203 >100 0.10857560648972467 5.566180378039297 >500 0.005640291246215429 1.094210871284548 >1k 0.0038777002317731068 2.2547692647950335 >5k 7.050364057769286E-4 1.1204777925443434 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT 5499 0.5701914014016816 TruSeq Adapter, Index 14 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC 5208 0.5400176065648223 TruSeq Adapter, Index 21 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC 4928 0.5109844019107996 TruSeq Adapter, Index 21 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC 4471 0.4635980643147697 TruSeq Adapter, Index 21 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG 1844 0.1912043906500638 TruSeq Adapter, Index 14 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 1843 0.1911007006334423 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1525 0.15812727534780224 No Hit CGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG 1318 0.13666344190714974 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1232 0.1277461004776999 No Hit GCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG 1231 0.1276424104610784 No Hit TTCCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCT 1076 0.1115704578847444 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 1067 0.11063724773515081 No Hit TGCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTG 1011 0.10483060680434628 TruSeq Adapter, Index 14 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6051349370031304 0.0 2 0.0 0.0 0.0 2.2554652415510783 0.0 3 0.0 0.0 0.0 3.198214872673844 0.0 4 0.0 0.0 0.0 4.1793298099465686 0.0 5 0.0 0.0 0.0 5.728562348288545 0.0 6 0.0 0.0 0.0 6.678362900541573 0.0 7 0.0 0.0 0.0 7.5390937285167245 0.0 8 0.0 0.0 0.0 8.966905257394913 0.0 9 0.0 0.0 0.0 9.575565654963174 0.0 10 0.0 0.0 0.0 10.93587498302076 0.0 11 0.0 0.0 0.0 13.697243815668184 0.0 12 0.0 0.0 0.0 16.115813453364897 0.0 13 0.0 0.0 0.0 16.878764595665963 0.0 14 0.0 0.0 0.0 17.132286686305555 0.0 15 0.0 0.0 0.0 17.469071860292217 0.0 16 0.0 0.0 0.0 18.373456185265027 0.0 17 0.0 0.0 0.0 19.731899093023426 0.0 18 1.0369001662150966E-4 0.0 0.0 21.274702850334865 0.0 19 1.0369001662150966E-4 0.0 0.0 22.36282588476099 0.0 20 1.0369001662150966E-4 0.0 0.0 23.52363562083879 0.0 21 1.0369001662150966E-4 0.0 0.0 25.214197651835885 0.0 22 1.0369001662150966E-4 0.0 0.0 26.95639731111049 0.0 23 1.0369001662150966E-4 0.0 0.0 28.620207317819233 0.0 24 1.0369001662150966E-4 0.0 0.0 29.81564951944862 0.0 25 1.0369001662150966E-4 0.0 0.0 30.901491373509067 0.0 26 1.0369001662150966E-4 0.0 0.0 31.7814048545592 0.0 27 1.0369001662150966E-4 0.0 0.0 32.7922788266023 0.0 28 1.0369001662150966E-4 0.0 0.0 33.770386753393 0.0 29 1.0369001662150966E-4 0.0 0.0 34.89760092408543 0.0 30 1.0369001662150966E-4 0.0 0.0 36.19974015281834 0.0 31 1.0369001662150966E-4 0.0 0.0 37.190083501570385 0.0 32 1.0369001662150966E-4 0.0 0.0 38.09260140624401 0.0 33 1.0369001662150966E-4 0.0 0.0 38.999163221565865 0.0 34 1.0369001662150966E-4 0.0 0.0 39.99469107114898 0.0 35 1.0369001662150966E-4 0.0 0.0 41.07420783419552 0.0 36 1.0369001662150966E-4 0.0 0.0 41.978695849184945 0.0 37 1.0369001662150966E-4 0.0 0.0 42.9112838586788 0.0 38 1.0369001662150966E-4 0.0 0.0 44.04886703103338 0.0 39 1.0369001662150966E-4 0.0 0.0 46.29085257042367 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTCTCG 100 0.0 45.000004 1 CGTATAG 25 3.8903367E-5 45.000004 44 CACGGGT 30 2.1651376E-6 45.000004 4 TCTAGCG 50 2.1827873E-11 45.000004 1 TGTTACG 30 2.1651376E-6 45.000004 1 ATACCCG 25 3.8903367E-5 45.000004 32 CGAACTT 20 7.0327224E-4 45.0 11 TCGCAAA 20 7.0327224E-4 45.0 31 CAAACGC 20 7.0327224E-4 45.0 23 CGAACAC 20 7.0327224E-4 45.0 26 CGACGTT 20 7.0327224E-4 45.0 27 TGGACGC 20 7.0327224E-4 45.0 33 ATTACGA 20 7.0327224E-4 45.0 10 CCCAGCG 45 3.8380676E-10 45.0 23 TTATCCG 35 1.2116652E-7 45.0 1 ACCGTTG 20 7.0327224E-4 45.0 11 GCGGAAT 20 7.0327224E-4 45.0 5 TCGAGCG 55 1.8189894E-12 45.0 18 CGTCCCG 20 7.0327224E-4 45.0 42 TCGACGT 20 7.0327224E-4 45.0 26 >>END_MODULE