SRR2933910.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933910.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1436444
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	5723	0.3984144178262431	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT	5270	0.3668782075737028	TruSeq Adapter, Index 16 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGC	4947	0.3443921238837017	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	4759	0.3313042485471066	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	4488	0.31243821548212114	TruSeq Adapter, Index 13 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	4182	0.2911356098810674	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCG	3914	0.27247842589060206	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2968	0.20662135105858634	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2546	0.17724324790942075	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2272	0.15816836576991516	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	1705	0.11869589068560975	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	1662	0.11570238728415448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGGC	20	7.0338754E-4	45.0	13
ACGGGAC	55	1.8189894E-12	45.0	5
GCCGAAT	20	7.0338754E-4	45.0	17
CGAATTG	25	3.891294E-5	45.0	31
CTATGCG	45	1.9288564E-8	40.0	1
TACGAAT	130	0.0	39.80769	12
TTGTTCG	375	0.0	39.600002	1
TTGGGAC	2085	0.0	39.496403	5
CGTTTTT	1400	0.0	39.375	1
TTTCGCG	540	0.0	38.75	1
CTATCCG	35	6.249378E-6	38.57143	1
TAAGACG	35	6.249378E-6	38.57143	14
TTTGGGA	6005	0.0	38.55537	4
CGAATAT	135	0.0	38.333332	14
GTTTGCG	215	0.0	37.67442	1
CGAACGA	90	0.0	37.5	22
TCCGATA	90	0.0	37.5	14
ATAATCG	30	1.1400641E-4	37.499996	26
CTGCGTA	30	1.1400641E-4	37.499996	1
CGGTCTA	30	1.1400641E-4	37.499996	31