##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933909.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1376173 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16936606080776 33.0 31.0 34.0 30.0 34.0 2 32.359450447000484 34.0 31.0 34.0 30.0 34.0 3 32.449149925191094 34.0 31.0 34.0 30.0 34.0 4 35.93278025364543 37.0 35.0 37.0 35.0 37.0 5 35.955220746228854 37.0 35.0 37.0 35.0 37.0 6 35.29243271013165 37.0 35.0 37.0 33.0 37.0 7 35.83161346720216 37.0 35.0 37.0 35.0 37.0 8 35.720806904364494 37.0 35.0 37.0 35.0 37.0 9 37.709923824984216 39.0 38.0 39.0 35.0 39.0 10 37.36232871884567 39.0 37.0 39.0 34.0 39.0 11 37.28939239470619 39.0 37.0 39.0 34.0 39.0 12 37.25935983339304 39.0 37.0 39.0 34.0 39.0 13 37.19363408524946 39.0 37.0 39.0 33.0 39.0 14 38.37585172794409 40.0 38.0 41.0 34.0 41.0 15 38.31413928336045 40.0 38.0 41.0 33.0 41.0 16 38.487876160918724 40.0 38.0 41.0 34.0 41.0 17 38.34064539850731 40.0 38.0 41.0 34.0 41.0 18 38.3392276988431 40.0 38.0 41.0 34.0 41.0 19 38.382631398813956 40.0 38.0 41.0 34.0 41.0 20 38.192502686798825 40.0 37.0 41.0 34.0 41.0 21 38.258375945466156 40.0 37.0 41.0 34.0 41.0 22 38.2891307996887 40.0 37.0 41.0 34.0 41.0 23 38.15338841846192 40.0 37.0 41.0 34.0 41.0 24 38.10874141550517 40.0 37.0 41.0 34.0 41.0 25 38.04879691724805 40.0 37.0 41.0 34.0 41.0 26 37.98466617205831 40.0 37.0 41.0 33.0 41.0 27 37.95348985919648 40.0 37.0 41.0 33.0 41.0 28 37.91131565580781 40.0 37.0 41.0 33.0 41.0 29 37.8972055112257 40.0 37.0 41.0 33.0 41.0 30 37.878536346811046 40.0 37.0 41.0 33.0 41.0 31 37.859438457228855 40.0 37.0 41.0 33.0 41.0 32 37.61155973849218 40.0 37.0 41.0 33.0 41.0 33 37.53614044164505 40.0 37.0 41.0 33.0 41.0 34 37.51454431964586 40.0 37.0 41.0 33.0 41.0 35 37.47160131756691 40.0 37.0 41.0 33.0 41.0 36 37.382435202550845 40.0 36.0 41.0 32.0 41.0 37 37.41572534848453 40.0 37.0 41.0 33.0 41.0 38 37.296945950836125 40.0 36.0 41.0 32.0 41.0 39 37.268179945399304 40.0 36.0 41.0 32.0 41.0 40 37.13236271893141 40.0 36.0 41.0 31.0 41.0 41 37.015629575642016 39.0 36.0 41.0 31.0 41.0 42 37.08303679842578 39.0 36.0 41.0 31.0 41.0 43 36.96397327952227 39.0 36.0 41.0 31.0 41.0 44 36.97375039330084 39.0 36.0 41.0 31.0 41.0 45 37.03636534069481 39.0 36.0 41.0 31.0 41.0 46 36.915286086851 39.0 35.0 41.0 31.0 41.0 47 36.71149630170044 39.0 35.0 41.0 31.0 41.0 48 36.73451375662798 39.0 35.0 41.0 31.0 41.0 49 36.83185471594051 39.0 35.0 41.0 31.0 41.0 50 36.77697789449437 39.0 35.0 41.0 31.0 41.0 51 35.83908563821554 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 8.0 10 9.0 11 10.0 12 7.0 13 10.0 14 12.0 15 21.0 16 15.0 17 51.0 18 168.0 19 422.0 20 982.0 21 1939.0 22 3018.0 23 4390.0 24 5670.0 25 7453.0 26 8864.0 27 9867.0 28 10749.0 29 13115.0 30 16987.0 31 23143.0 32 31555.0 33 43557.0 34 67977.0 35 90373.0 36 102646.0 37 161057.0 38 314473.0 39 457414.0 40 208.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.768244254174437 4.0564667378302 52.330411946753784 11.844877061241574 2 16.95789700858831 16.295407626802735 47.56945529377484 19.177240070834117 3 16.735686574289716 16.23138951280108 48.01293151369777 19.019992399211436 4 16.262853580182142 3.7080367075941765 58.6431357104085 21.38597400181518 5 24.609769265928048 4.578421462999201 47.67990652338042 23.131902747692333 6 18.41672522277359 13.86795119508957 50.89229333811956 16.823030244017286 7 74.60500968991543 1.218088132814697 19.154205176238744 5.022697001031121 8 73.79588176777193 9.69921659558791 10.147779385295308 6.357122251344853 9 69.78221488141389 3.931773112828111 10.91003820013908 15.375973805618914 10 37.021580862289845 29.594607654706202 19.216987980435597 14.166823502568354 11 24.7191305162941 23.351206570685516 30.447189415865594 21.482473497154793 12 19.320754004038736 20.325278871188434 34.51114067780722 25.842826446965606 13 21.50158446648786 22.738638238070358 38.55874225115593 17.201035044285856 14 19.76510220735329 29.452765023002197 29.859981266890134 20.922151502754378 15 14.48095551940054 25.320435730100794 38.987685414551805 21.21092333594686 16 16.068982606111295 27.91923689826788 28.54706494023644 27.464715555384387 17 17.574461931748406 27.772598357909946 31.480199073808308 23.172740636533344 18 17.125317819779927 25.8312726670266 32.35923099784693 24.684178515346545 19 17.574970588726853 27.69855243490462 30.17004402789475 24.556432948473773 20 19.92234987897597 28.359588511037494 34.08728408419581 17.630777525790727 21 20.23292129695903 31.419087571112065 30.333976905519872 18.014014226409035 22 17.820579244034 23.876140572442566 32.436256197440294 25.867023986083144 23 18.12395679903617 29.352704928813456 29.933009875938566 22.590328396211813 24 20.820928764043476 25.261286190035698 27.71897137932513 26.1988136665957 25 16.203631374834416 34.349678419791694 25.179755742918953 24.26693446245494 26 16.614698878702026 27.696517806990833 29.088784622282226 26.59999869202491 27 19.885871907093076 28.381751422241248 27.43223417404643 24.300142496619248 28 14.098445471608583 27.07668294611215 33.726137629498616 25.098733952780645 29 16.85020705972287 25.916218382427207 29.13311044468973 28.10046411316019 30 16.687073500206733 29.010160786470884 29.84174228094869 24.46102343237369 31 18.796546655108042 26.03909537536342 27.082786829853518 28.081571139675027 32 17.695376962053462 31.48644828811494 23.183931090059172 27.63424365977243 33 16.326290371922717 28.882923876576566 23.584680123792577 31.20610562770814 34 17.305237059584805 27.508314724965537 25.600269733529142 29.586178481920516 35 14.586974166765371 26.972626261378473 23.492467880128444 34.94793169172771 36 15.426766838180955 33.038869386334426 26.294295847978415 25.24006792750621 37 14.333662991498889 24.746016670869142 29.849154139777482 31.07116619785448 38 15.255858093422848 27.865827915530968 28.517853496617068 28.36046049442912 39 17.824285173448395 27.449964503009433 26.149328609121092 28.57642171442108 40 16.76685998054024 27.78182684880462 27.212421694074802 28.238891476580342 41 16.258638993789297 28.61711427269682 23.398003012702617 31.726243720811265 42 17.59887746671385 24.358783379705894 28.46764178631611 29.574697367264147 43 19.651889697007572 28.715793726515486 25.24580848483439 26.386508091642547 44 17.895133824017766 23.73822186600086 28.306470189431128 30.060174120550247 45 17.67219673689282 22.122799967736615 26.98330805792586 33.221695237444706 46 23.198246150738317 25.252275694988928 25.852563594838728 25.696914559434024 47 13.617619296411135 24.959507271251507 34.98055840363094 26.44231502870642 48 16.18074181080431 26.333825761731994 27.69673580283874 29.788696624624954 49 17.2444162180191 21.368824995113258 34.52937966374867 26.857379123118967 50 19.415582197877736 22.303663856215753 28.523521388662616 29.757232557243896 51 16.58396146414731 21.475061638325997 25.360982957811263 36.57999393971543 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 99.0 1 291.0 2 483.0 3 2724.5 4 4966.0 5 3355.0 6 1744.0 7 1909.0 8 2074.0 9 2443.5 10 2813.0 11 3129.5 12 3446.0 13 3749.5 14 4053.0 15 3869.5 16 3686.0 17 3833.5 18 3981.0 19 4010.5 20 4040.0 21 4048.0 22 4056.0 23 4475.0 24 4894.0 25 5674.5 26 7714.5 27 8974.0 28 10255.5 29 11537.0 30 14989.5 31 18442.0 32 22564.5 33 26687.0 34 30059.5 35 33432.0 36 37776.0 37 42120.0 38 47766.5 39 53413.0 40 59588.0 41 65763.0 42 74918.0 43 84073.0 44 97561.0 45 111049.0 46 191779.5 47 272510.0 48 236184.5 49 199859.0 50 179443.0 51 159027.0 52 124766.0 53 90505.0 54 73882.0 55 57259.0 56 46532.0 57 35805.0 58 30172.0 59 24539.0 60 19631.5 61 14724.0 62 11632.5 63 8541.0 64 7075.5 65 5610.0 66 3964.0 67 2318.0 68 1867.0 69 1416.0 70 1084.5 71 753.0 72 594.5 73 436.0 74 364.5 75 204.0 76 115.0 77 135.5 78 156.0 79 83.5 80 11.0 81 8.5 82 6.0 83 4.5 84 3.0 85 3.0 86 3.0 87 2.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1376173.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.135183253519266 #Duplication Level Percentage of deduplicated Percentage of total 1 69.13363998506615 21.524885499178616 2 13.554210677932907 8.440256666284974 3 5.345123138626477 4.992641653012842 4 2.780690027746237 3.4630917434045068 5 1.6301156727339547 2.537697509750276 6 1.073223834212003 2.0049012450141177 7 0.7821616689519563 1.7046922827688344 8 0.5975822112695225 1.488466532553588 9 0.4700554148159602 1.3171735331643544 >10 4.3292478413279465 28.257036278252407 >50 0.20852003678190212 4.189381304536264 >100 0.08391213849629946 4.70439880625787 >500 0.0049360080165930425 1.1123759118521246 >1k 0.0037607680126423185 2.2371928700868056 >5k 0.0018803840063211592 4.236322658512101 >10k+ 9.401920031605796E-4 7.789485505370282 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC 34845 2.5320217734252886 No Hit GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC 33938 2.4661143620751167 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG 26634 1.9353671377072506 No Hit GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC 11022 0.8009167452057262 No Hit CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT 8628 0.6269560585769376 No Hit GAACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT 8235 0.5983986025012844 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTCACCAT 7792 0.5662078822938686 No Hit CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC 7290 0.5297299104109731 No Hit TCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC 7274 0.5285672658888091 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTC 6757 0.4909993147663848 No Hit GAATGACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCT 6431 0.4673104326272932 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTCACCATCGTA 5480 0.39820574884117044 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3309 0.2404494202400425 No Hit CGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG 3124 0.22700634295252123 No Hit TCCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG 2759 0.20048351479065493 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACTCACCATCGT 2228 0.16189824971133718 No Hit GAATGCTACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC 2012 0.14620254866212315 No Hit TTCCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCT 1896 0.13777337587643415 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACTCACCATCGTATG 1850 0.13443077287521266 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC 1789 0.12999819063446238 No Hit TGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG 1615 0.11735443145592886 No Hit CGTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC 1596 0.11597379108585912 No Hit GAATGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTT 1517 0.11023323375767435 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACTCACCATCGTAT 1487 0.10805327527861686 No Hit GAATGCTACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG 1444 0.1049286681253011 No Hit GCCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG 1438 0.1044926764294896 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.4533056527050016E-4 0.0 0.0 0.6508629365639349 0.0 2 1.4533056527050016E-4 0.0 0.0 2.6371684373984956 0.0 3 1.4533056527050016E-4 0.0 0.0 3.6863097880862363 0.0 4 1.4533056527050016E-4 0.0 0.0 5.3912553145571085 0.0 5 2.179958479057502E-4 0.0 0.0 9.594360592745243 0.0 6 2.179958479057502E-4 0.0 0.0 10.744288690448077 0.0 7 2.179958479057502E-4 0.0 0.0 12.181753311538593 0.0 8 2.179958479057502E-4 0.0 0.0 14.137612058948983 0.0 9 2.179958479057502E-4 0.0 0.0 14.787603012121295 0.0 10 2.179958479057502E-4 0.0 0.0 18.08827814526226 0.0 11 2.179958479057502E-4 0.0 0.0 20.676397516881963 0.0 12 2.179958479057502E-4 0.0 0.0 25.90996916812058 0.0 13 2.179958479057502E-4 0.0 0.0 26.85214722276923 0.0 14 2.179958479057502E-4 0.0 0.0 27.22186818081738 0.0 15 2.179958479057502E-4 0.0 0.0 27.985652966596497 0.0 16 2.179958479057502E-4 0.0 0.0 28.915623253762426 0.0 17 2.179958479057502E-4 0.0 0.0 30.18806501798829 0.0 18 2.179958479057502E-4 0.0 0.0 31.516677045691203 0.0 19 2.179958479057502E-4 0.0 0.0 33.280554116379264 0.0 20 2.906611305410003E-4 0.0 0.0 34.37700056606255 0.0 21 2.906611305410003E-4 0.0 0.0 35.81250322452192 0.0 22 2.906611305410003E-4 0.0 0.0 37.46374910712534 0.0 23 2.906611305410003E-4 0.0 0.0 39.01231894536515 0.0 24 2.906611305410003E-4 0.0 0.0 40.08856444647584 0.0 25 2.906611305410003E-4 0.0 0.0 40.99404653339369 0.0 26 2.906611305410003E-4 0.0 0.0 41.80397377364619 0.0 27 2.906611305410003E-4 0.0 0.0 42.63940652810366 0.0 28 2.906611305410003E-4 0.0 0.0 43.48682905419595 0.0 29 2.906611305410003E-4 0.0 0.0 44.37676077062986 0.0 30 2.906611305410003E-4 0.0 0.0 45.359631383554245 0.0 31 2.906611305410003E-4 0.0 0.0 46.24810979433545 0.0 32 2.906611305410003E-4 0.0 0.0 47.07235209526709 0.0 33 2.906611305410003E-4 0.0 0.0 47.87058022501532 0.0 34 2.906611305410003E-4 0.0 0.0 48.66888102004617 0.0 35 2.906611305410003E-4 0.0 0.0 49.51012699711446 0.0 36 2.906611305410003E-4 0.0 0.0 50.27224048139296 0.0 37 2.906611305410003E-4 0.0 0.0 51.05121231124284 0.0 38 2.906611305410003E-4 0.0 0.0 51.82364426565555 0.0 39 2.906611305410003E-4 0.0 0.0 52.66343693707114 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTACCG 30 2.165816E-6 45.000004 1 TGCCGCG 30 2.165816E-6 45.000004 1 CGGGTTC 45 3.8562575E-10 45.0 6 TCGGCCG 20 7.033772E-4 45.0 1 TATTGCG 40 6.8175723E-9 45.0 1 TACGATT 20 7.033772E-4 45.0 42 CGTACAA 20 7.033772E-4 45.0 24 CCGCGCA 40 6.8175723E-9 45.0 40 CGCCGGA 20 7.033772E-4 45.0 39 ACGAGTA 20 7.033772E-4 45.0 14 TCGACTC 20 7.033772E-4 45.0 27 TCGCGGA 20 7.033772E-4 45.0 3 CACGGGT 25 3.8912094E-5 44.999996 4 ACGTTCC 25 3.8912094E-5 44.999996 10 ATGTCGG 25 3.8912094E-5 44.999996 2 GCGATCG 25 3.8912094E-5 44.999996 9 TTACGCG 25 3.8912094E-5 44.999996 1 CGTTTTT 2020 0.0 43.217823 1 TCGGGCG 200 0.0 42.749996 5 CTTTGCG 235 0.0 42.12766 1 >>END_MODULE