SRR2933907.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933907.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	806159
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	3325	0.41244965323217875	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGCT	3135	0.38888110161891143	TruSeq Adapter, Index 27 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	2888	0.35824198452166384	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTGC	2557	0.3171830867111823	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTG	956	0.11858702811728208	TruSeq Adapter, Index 27 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	940	0.11660230798142797	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTCTTGCTCGTATGCCGTCTTCTG	817	0.10134477193704963	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	20	7.0320326E-4	45.0	26
GGCGTAC	20	7.0320326E-4	45.0	16
CGGCACT	20	7.0320326E-4	45.0	17
ATTACCG	25	3.8897662E-5	45.0	20
CCGCTAT	40	6.8102963E-9	45.0	25
TATTGCG	40	6.8102963E-9	45.0	1
GCCGATA	20	7.0320326E-4	45.0	9
CCCCGAC	20	7.0320326E-4	45.0	41
TACGAGA	20	7.0320326E-4	45.0	35
CACTACG	25	3.8897662E-5	45.0	25
GTCCGTT	20	7.0320326E-4	45.0	23
CATACGT	25	3.8897662E-5	45.0	39
TCGTAAT	20	7.0320326E-4	45.0	22
ACTCCGC	20	7.0320326E-4	45.0	30
TAGTGCG	20	7.0320326E-4	45.0	16
TGGTCGA	20	7.0320326E-4	45.0	17
CCCGCTA	40	6.8102963E-9	45.0	24
GTACGTC	20	7.0320326E-4	45.0	37
GTACGGA	20	7.0320326E-4	45.0	37
TGCCGTA	20	7.0320326E-4	45.0	39