SRR2933906.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933906.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1158075
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGC	11539	0.9963948794335428	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTC	9827	0.8485633486604925	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCG	9360	0.8082378084320962	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	4784	0.4130993243097381	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	3992	0.3447099712885608	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGCT	3951	0.3411696133670099	TruSeq Adapter, Index 21 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCTGC	2986	0.2578416769207521	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTGGACT	2366	0.20430455713144657	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCT	2272	0.1961876389698422	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTCTTCT	2258	0.1949787362649224	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTTGGACTCGTATGCCGTC	2182	0.18841612158107202	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTGGACTCGTA	1991	0.17192323467823759	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1553	0.1341018500528895	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACG	25	3.890825E-5	45.0	26
TGTTTCG	250	0.0	42.300003	1
ACGGGCG	55	6.184564E-11	40.909092	5
TGCGTTG	195	0.0	40.384617	1
CCGATGA	460	0.0	40.108692	18
TAATCCG	45	1.9283107E-8	40.0	11
CGTTTGG	725	0.0	39.413795	2
CGGGATC	240	0.0	39.375004	6
CGATGAA	480	0.0	39.375004	19
TACGCGG	40	3.4582445E-7	39.375	2
CGTAAGG	40	3.4582445E-7	39.375	2
TACGGCT	1550	0.0	39.048386	7
TTACGAT	35	6.2483286E-6	38.57143	30
TCGCGCA	35	6.2483286E-6	38.57143	34
TTCGGGA	795	0.0	38.49057	4
TTTGGGC	2910	0.0	38.195877	4
TCTAGCG	65	9.094947E-12	38.07692	1
TGGGCGA	880	0.0	37.840908	6
TTAGCCG	30	1.139927E-4	37.500004	1
GCGATTT	360	0.0	37.5	9