SRR2933899.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933899.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	688782
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	3877	0.5628776594045721	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	3050	0.4428106425545383	TruSeq Adapter, Index 21 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	2492	0.36179807253964247	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	2480	0.3600558667328705	TruSeq Adapter, Index 14 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	1058	0.15360447863039395	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	872	0.12660028862542866	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	831	0.12064775211895781	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	720	0.10453234840631725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	25	3.889171E-5	45.000004	24
CAAACGA	25	3.889171E-5	45.000004	29
ACACGAC	35	1.210974E-7	45.000004	26
CGTGATA	25	3.889171E-5	45.000004	13
TCTAGCG	35	1.210974E-7	45.000004	1
CGTTCAT	35	1.210974E-7	45.000004	17
ACGATTG	25	3.889171E-5	45.000004	10
AAACGCG	25	3.889171E-5	45.000004	13
GTCAAGC	35	1.210974E-7	45.000004	16
AATCGTT	25	3.889171E-5	45.000004	22
CTAGCGG	35	1.210974E-7	45.000004	2
CCCGAAC	25	3.889171E-5	45.000004	25
TACGGTT	40	6.8084773E-9	45.0	33
CGTTCGG	45	3.8380676E-10	45.0	2
AACGGGT	20	7.031316E-4	45.0	19
GTATCGC	20	7.031316E-4	45.0	23
TCGTACG	45	3.8380676E-10	45.0	30
CAAGCCG	20	7.031316E-4	45.0	27
CGTGTAT	20	7.031316E-4	45.0	24
CCGAACG	20	7.031316E-4	45.0	26