SRR2933896.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933896.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	122018
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1455	1.1924470160140306	No Hit
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	1224	1.0031306856365454	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	934	0.7654608336474946	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	715	0.5859791178350735	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	492	0.403219197167631	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	353	0.2893015784556377	No Hit
TCCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	330	0.2704519005392647	No Hit
CGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	299	0.2450458129128489	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	251	0.20570735465259227	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCC	248	0.20324870101132622	No Hit
GCCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	222	0.18194036945368716	No Hit
TTCCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	221	0.1811208182399318	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	218	0.17866216459866577	No Hit
TGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	162	0.1327672966283663	No Hit
TTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	150	0.12293268206330214	No Hit
TTTTTTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA	147	0.1204740284220361	No Hit
CGTCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	132	0.10818076021570587	No Hit
TGCCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	130	0.10654165778819519	No Hit
GGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	126	0.1032634529331738	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTTGCG	35	1.2000237E-7	45.000004	1
TCTTCCG	25	3.870269E-5	45.0	1
TGCGGGC	55	1.8189894E-12	45.0	4
TCGATCA	20	7.008492E-4	45.0	17
CTACGGG	20	7.008492E-4	45.0	3
CCTCAGA	20	7.008492E-4	45.0	15
TCAGATC	20	7.008492E-4	45.0	17
CGGGATC	20	7.008492E-4	45.0	6
GCGATTT	20	7.008492E-4	45.0	9
TCTCCGG	25	3.870269E-5	45.0	2
CTCGATC	20	7.008492E-4	45.0	16
GGACCGA	20	7.008492E-4	45.0	8
TTGTTCG	20	7.008492E-4	45.0	1
TGGGACG	25	3.870269E-5	45.0	6
CTCAGAT	20	7.008492E-4	45.0	16
GACTAAT	20	7.008492E-4	45.0	9
GGCACCG	30	2.149527E-6	44.999996	8
TTTGTCG	30	2.149527E-6	44.999996	1
TTCGTTG	30	2.149527E-6	44.999996	1
GGCGATC	30	2.149527E-6	44.999996	8

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content