SRR2933894.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933894.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	935397
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	14639	1.5650039501944095	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	13425	1.4352194843472879	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	12993	1.3890358852979001	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	6650	0.7109280872185821	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	5470	0.5847784416670141	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	4673	0.49957397768006523	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	3563	0.38090778567816663	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	3279	0.3505463455623655	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT	3255	0.34798059005962173	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC	3072	0.32841670435120063	No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	3008	0.3215746896772173	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA	2624	0.2805226016333172	No Hit
TCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	1636	0.1748990001036993	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1429	0.1527693588925344	No Hit
CGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	1252	0.1338469120597992	No Hit
GCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	1220	0.13042590472280752	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGT	1014	0.10840316999092363	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	60	0.0	45.000004	40
CGTCGGA	30	2.1650667E-6	45.000004	23
TTACGAG	30	2.1650667E-6	45.000004	1
TCGCCTA	20	7.032612E-4	45.0	13
ATTACGC	25	3.890247E-5	45.0	41
CGTCTAC	25	3.890247E-5	45.0	42
GATCACG	25	3.890247E-5	45.0	38
CCGCTAT	20	7.032612E-4	45.0	23
TACGCTA	20	7.032612E-4	45.0	28
CCATACG	20	7.032612E-4	45.0	2
TGTCGAT	20	7.032612E-4	45.0	9
TAGTCCG	20	7.032612E-4	45.0	33
ACGACTA	20	7.032612E-4	45.0	28
GTCGGTA	20	7.032612E-4	45.0	14
TAATCGA	20	7.032612E-4	45.0	28
TTGCCCG	85	0.0	42.35294	1
TGCTACG	240	0.0	42.187504	4
TATTGCG	80	0.0	42.1875	1
CGGGCTA	65	0.0	41.53846	6
TACGGCT	2010	0.0	41.41791	7