##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933893.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 99388 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.405833702257816 33.0 31.0 34.0 31.0 34.0 2 32.64258260554594 34.0 31.0 34.0 31.0 34.0 3 32.68892622851853 34.0 31.0 34.0 31.0 34.0 4 36.067543365396226 37.0 35.0 37.0 35.0 37.0 5 36.09693323137602 37.0 35.0 37.0 35.0 37.0 6 35.759779852698514 37.0 35.0 37.0 35.0 37.0 7 36.02869561717712 37.0 35.0 37.0 35.0 37.0 8 36.03323338833662 37.0 36.0 37.0 35.0 37.0 9 37.87884855314525 39.0 38.0 39.0 35.0 39.0 10 37.57268483116674 39.0 37.0 39.0 35.0 39.0 11 37.51612870769107 39.0 37.0 39.0 35.0 39.0 12 37.445325391395336 39.0 37.0 39.0 35.0 39.0 13 37.420080895077874 39.0 37.0 39.0 35.0 39.0 14 38.6818227552622 40.0 38.0 41.0 35.0 41.0 15 38.71197730108263 40.0 38.0 41.0 35.0 41.0 16 38.7684328087898 40.0 38.0 41.0 35.0 41.0 17 38.73897251177205 40.0 38.0 41.0 35.0 41.0 18 38.674055217933756 40.0 38.0 41.0 35.0 41.0 19 38.67812009498129 40.0 38.0 41.0 35.0 41.0 20 38.625659033283696 40.0 38.0 41.0 35.0 41.0 21 38.55191773654767 40.0 38.0 41.0 34.0 41.0 22 38.54483438644505 40.0 38.0 41.0 34.0 41.0 23 38.47458445687608 40.0 38.0 41.0 34.0 41.0 24 38.41386284058438 40.0 38.0 41.0 34.0 41.0 25 38.33484927757878 40.0 37.0 41.0 34.0 41.0 26 38.25246508632833 40.0 37.0 41.0 34.0 41.0 27 38.2515796675655 40.0 37.0 41.0 34.0 41.0 28 38.171308407453616 40.0 37.0 41.0 34.0 41.0 29 38.174417434700366 40.0 37.0 41.0 34.0 41.0 30 38.068841308809915 40.0 37.0 41.0 34.0 41.0 31 37.97808588562 40.0 37.0 41.0 34.0 41.0 32 37.87263049865175 40.0 37.0 41.0 33.0 41.0 33 37.76427737755061 40.0 37.0 41.0 33.0 41.0 34 37.71641445647362 40.0 37.0 41.0 33.0 41.0 35 37.68980158570451 40.0 37.0 41.0 33.0 41.0 36 37.58046243007204 40.0 37.0 41.0 33.0 41.0 37 37.48884171127299 40.0 36.0 41.0 33.0 41.0 38 37.44688493580714 40.0 36.0 41.0 33.0 41.0 39 37.37027608966877 40.0 36.0 41.0 33.0 41.0 40 37.219714653680526 40.0 36.0 41.0 32.0 41.0 41 37.110405682778605 40.0 35.0 41.0 32.0 41.0 42 37.11709663138407 40.0 35.0 41.0 32.0 41.0 43 37.066366160904735 39.0 35.0 41.0 32.0 41.0 44 36.94999396305389 39.0 35.0 41.0 31.0 41.0 45 36.94287036664386 39.0 35.0 41.0 31.0 41.0 46 36.81765404274158 39.0 35.0 41.0 31.0 41.0 47 36.74577413772286 39.0 35.0 41.0 31.0 41.0 48 36.70833501026281 39.0 35.0 41.0 31.0 41.0 49 36.7111321286272 39.0 35.0 41.0 31.0 41.0 50 36.61165331830804 39.0 35.0 41.0 31.0 41.0 51 35.69591902442951 38.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 3.0 12 3.0 13 3.0 14 4.0 15 5.0 16 3.0 17 3.0 18 13.0 19 28.0 20 54.0 21 83.0 22 144.0 23 192.0 24 290.0 25 407.0 26 618.0 27 793.0 28 898.0 29 964.0 30 1154.0 31 1456.0 32 1968.0 33 2698.0 34 4653.0 35 6238.0 36 7042.0 37 11310.0 38 21691.0 39 36647.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.99975852215559 4.715861069746851 56.637622248158735 15.646758159938825 2 21.121262124200104 4.526703424960759 52.33730430233025 22.014730148508875 3 20.4441180021733 4.288244053608081 52.84239546021653 22.42524248400209 4 18.499215197005675 4.823519942045317 51.42673159737594 25.250533263573065 5 17.97299472773373 5.655612347567111 51.15104439167706 25.220348533022097 6 21.30840745361613 6.116432567311949 53.304221837646395 19.270938141425525 7 81.21201754739002 2.0827464080170643 11.450074455668693 5.255161588924216 8 82.45462228840505 2.842395460216525 8.75558417515193 5.947398076226506 9 76.57866140781583 5.76025274681048 11.664386042580594 5.996699802793094 10 33.912544774016986 35.12898941522115 17.306918340242284 13.65154747051958 11 23.91838048859017 26.12689660723629 30.132410351350263 19.82231255282328 12 23.387129230893066 22.752243731637623 33.88839698957621 19.972230047893106 13 22.496679679639392 24.171932225218338 33.431601400571495 19.89978669457077 14 19.60498249285628 26.1118042419608 32.00990059162072 22.273312673562202 15 17.560470076870445 27.655250130800503 33.29577011309212 21.48850967923693 16 20.12013522759287 27.921881917334083 29.920111079808425 22.03787177526462 17 20.562844609007126 27.405723024912465 28.807300680162594 23.22413168591782 18 20.337465287559866 26.459934800982012 30.722018754779253 22.480581156678873 19 21.444238741095504 27.99231295528635 29.33754578017467 21.225902523443473 20 23.333802873586347 28.280074053205617 29.499537167464883 18.886585905743146 21 24.247394051595766 27.05155551978106 29.561918943936895 19.13913148468628 22 22.447377953072806 25.74355052923894 29.07996941280637 22.729102104881875 23 21.872861914919305 26.42773775506097 28.757998953596008 22.941401376423713 24 22.266269569766976 26.188272226023262 28.984384432728298 22.561073771481468 25 20.47631504809434 27.45502475147905 26.996216847104275 25.07244335332233 26 20.412927113937297 28.38169597939389 27.13506660763875 24.070310299030066 27 20.331428341449673 26.907674970821425 29.702781019841428 23.05811566788747 28 18.138004588079042 26.223487744999396 31.127500301847306 24.511007365074256 29 19.323258341047207 24.384231496760172 29.822513784360282 26.469996377832334 30 22.10025355173663 25.57552219583853 29.543808105606313 22.78041614681853 31 21.14339759327082 28.200587596088063 27.94904817482996 22.706966635811167 32 21.356703022497687 27.49124642814022 27.172294441984945 23.97975610737715 33 21.851732603533623 26.564575200225377 27.253793214472573 24.329898981768423 34 19.685475107658874 26.065520988449308 29.51966032116553 24.729343582726283 35 19.50134825129794 24.79876846299352 28.141224292671147 27.558658993037387 36 20.188553950175073 26.311023463597216 29.049784682255403 24.45063790397231 37 19.457077313156518 27.10790035014287 30.95745965307683 22.477562683623777 38 20.386767014126452 27.019358473860024 28.56179820501469 24.032076306998835 39 22.135469070712762 25.770716786734816 27.818247675775748 24.275566466776674 40 22.596289290457598 26.742665110476118 28.337425041252466 22.32362055781382 41 18.81917334084598 26.96804443192337 28.96325512134262 25.249527105888035 42 20.17144926952952 25.418561596973476 28.349498933472855 26.06049020002415 43 20.880790437477362 24.079365718195355 29.483438644504368 25.55640519982292 44 20.400853221716908 24.93258743510283 27.729705799492898 26.936853543687366 45 21.5931500784803 23.982774580432245 26.809071517688253 27.615003823399203 46 21.697790477723668 25.24751479051797 29.27818247675776 23.776512255000604 47 18.35332233267598 25.988046846701817 31.237171489515838 24.42145933110637 48 18.386525536282047 24.497927315168834 31.413249084396504 25.70229806415261 49 20.61516480862881 23.41530164607397 31.478649333923613 24.490884211373608 50 20.28112045719805 23.693001167142917 29.831569203525575 26.194309172133458 51 19.166297742182152 23.061134140942567 28.415905340684994 29.356662776190284 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 10.0 1 40.0 2 70.0 3 298.5 4 527.0 5 370.5 6 214.0 7 242.5 8 271.0 9 273.0 10 275.0 11 334.5 12 394.0 13 383.0 14 372.0 15 386.5 16 401.0 17 388.0 18 375.0 19 389.0 20 403.0 21 413.0 22 423.0 23 476.0 24 529.0 25 588.0 26 795.0 27 943.0 28 1104.5 29 1266.0 30 1460.0 31 1654.0 32 1861.5 33 2069.0 34 2411.5 35 2754.0 36 3030.5 37 3307.0 38 3543.5 39 3780.0 40 4316.0 41 4852.0 42 5378.5 43 5905.0 44 6627.0 45 7349.0 46 8610.5 47 9872.0 48 10921.5 49 11971.0 50 11316.0 51 10661.0 52 8777.0 53 6893.0 54 5984.5 55 5076.0 56 4661.0 57 4246.0 58 3765.5 59 3285.0 60 3071.0 61 2857.0 62 2450.0 63 2043.0 64 1746.0 65 1449.0 66 1165.5 67 882.0 68 697.5 69 513.0 70 425.0 71 337.0 72 283.5 73 230.0 74 191.0 75 111.5 76 71.0 77 53.0 78 35.0 79 20.5 80 6.0 81 11.0 82 16.0 83 9.5 84 3.0 85 1.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 99388.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.7734132893307 #Duplication Level Percentage of deduplicated Percentage of total 1 77.08343041769577 49.92956896204773 2 12.305637106419995 15.94156236165332 3 5.487984839305963 10.66426530365839 4 2.5878807648694413 6.705034813055902 5 1.205399443900772 3.903891817925705 6 0.49241188623266074 1.9137119169316215 7 0.2594094164064806 1.1761983338028736 8 0.12116128430961369 0.6278423954602166 9 0.08232753933858365 0.479937215760454 >10 0.3308635071531758 3.6644262888879946 >50 0.021746897183776814 0.9407574355052924 >100 0.017086847787253213 2.379562925101622 >500 0.004660049396523603 1.6732402302088785 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGCT 584 0.5875960880589206 RNA PCR Primer, Index 21 (96% over 27bp) TCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 571 0.5745160381534995 TruSeq Adapter, Index 21 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 508 0.5111281039964584 RNA PCR Primer, Index 21 (96% over 26bp) GCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTGC 491 0.4940234233509076 TruSeq Adapter, Index 21 (96% over 25bp) CGGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCT 352 0.35416750513140416 RNA PCR Primer, Index 21 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 313 0.31492735541514066 No Hit CGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 235 0.2364470559826136 RNA PCR Primer, Index 21 (96% over 25bp) TCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 193 0.19418843321125287 RNA PCR Primer, Index 21 (96% over 25bp) TTCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCT 161 0.16199138729021614 TruSeq Adapter, Index 21 (95% over 23bp) TGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 146 0.14689902201473015 RNA PCR Primer, Index 14 (95% over 24bp) CGTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 135 0.13583128747937376 RNA PCR Primer, Index 14 (95% over 22bp) CGGTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 118 0.118726606833823 RNA PCR Primer, Index 21 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTCTG 111 0.1116835030385962 TruSeq Adapter, Index 21 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCC 110 0.11067734535356383 No Hit TTTCCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 100 0.10061576850323983 RNA PCR Primer, Index 14 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.618786976294925 0.0 2 0.0 0.0 0.0 2.3201996216847105 0.0 3 0.0 0.0 0.0 3.3615728256932425 0.0 4 0.0 0.0 0.0 4.884895560832294 0.0 5 0.0 0.0 0.0 6.756348854992554 0.0 6 0.0 0.0 0.0 7.923491769630137 0.0 7 0.0 0.0 0.0 8.850162997544976 0.0 8 0.0 0.0 0.0 10.213506660763874 0.0 9 0.0 0.0 0.0 10.872539944460096 0.0 10 0.0 0.0 0.0 11.984344186420897 0.0 11 0.0 0.0 0.0 14.040930494627117 0.0 12 0.0 0.0 0.0 15.809755704914075 0.0 13 0.0 0.0 0.0 16.431561154264095 0.0 14 0.0 0.0 0.0 16.688131363947356 0.0 15 0.0 0.0 0.0 17.02519418843321 0.0 16 0.0 0.0 0.0 17.694289048979755 0.0 17 0.0 0.0 0.0 18.713526783917576 0.0 18 0.0 0.0 0.0 19.90783595605103 0.0 19 0.0 0.0 0.0 20.56485692437719 0.0 20 0.0 0.0 0.0 21.259105727049544 0.0 21 0.0 0.0 0.0 22.11333360164205 0.0 22 0.0 0.0 0.0 22.974604580029784 0.0 23 0.0 0.0 0.0 23.802672354811445 0.0 24 0.0 0.0 0.0 24.451644061657344 0.0 25 0.0 0.0 0.0 25.018110838330582 0.0 26 0.0 0.0 0.0 25.509115788626392 0.0 27 0.0 0.0 0.0 25.993077635126976 0.0 28 0.0 0.0 0.0 26.48106411236769 0.0 29 0.0 0.0 0.0 27.024389262285187 0.0 30 0.0 0.0 0.0 27.657262446170563 0.0 31 0.0 0.0 0.0 28.148267396466373 0.0 32 0.0 0.0 0.0 28.606069143156116 0.0 33 0.0 0.0 0.0 29.075944782066244 0.0 34 0.0 0.0 0.0 29.587072886062703 0.0 35 0.0 0.0 0.0 30.132410351350263 0.0 36 0.0 0.0 0.0 30.63850766692156 0.0 37 0.0 0.0 0.0 31.12448182879221 0.0 38 0.0 0.0 0.0 31.58127741779692 0.0 39 0.0 0.0 0.0 32.10045478327363 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTCGG 30 2.145467E-6 45.000004 2 TACGGGA 30 2.145467E-6 45.000004 4 CGGGAAC 60 0.0 45.000004 6 TTTGCCG 30 2.145467E-6 45.000004 1 GGAGACC 20 7.0021796E-4 45.0 8 TTGCTCG 20 7.0021796E-4 45.0 1 TTTCGCG 20 7.0021796E-4 45.0 1 CAACAAT 20 7.0021796E-4 45.0 26 TGACGGG 20 7.0021796E-4 45.0 3 ACGGGAT 20 7.0021796E-4 45.0 5 CGGGATA 45 3.765308E-10 45.0 6 GCGATTC 35 1.1970042E-7 45.0 9 CGGGACT 40 6.706614E-9 45.0 6 GACGGGA 20 7.0021796E-4 45.0 4 GCGATGC 20 7.0021796E-4 45.0 9 ACGTCTC 20 7.0021796E-4 45.0 34 TCTTTCG 25 3.865044E-5 45.0 1 TTGCCGG 35 1.1970042E-7 45.0 2 GAATTGA 20 7.0021796E-4 45.0 9 GGCGATG 40 6.706614E-9 45.0 8 >>END_MODULE