SRR2933891.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933891.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	391690
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	2180	0.5565625877607292	No Hit
CTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGCT	1712	0.4370803441497102	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1477	0.377083918404861	No Hit
TCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1221	0.3117261099338763	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	600	0.1531823636038704	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTG	464	0.11846102785365979	No Hit
TCCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTG	440	0.11233373330950497	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	434	0.11080190967346626	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGC	420	0.10722765452270928	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCG	407	0.1039087033112921	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	40	6.7957444E-9	45.0	3
CGAAAGA	20	7.027586E-4	45.0	31
AACCCTC	20	7.027586E-4	45.0	21
ACCATAA	20	7.027586E-4	45.0	45
CGTTGAA	20	7.027586E-4	45.0	18
CTAACGC	20	7.027586E-4	45.0	23
CCGTACG	20	7.027586E-4	45.0	20
CCCCGAC	20	7.027586E-4	45.0	28
GTTCGCG	40	6.7957444E-9	45.0	1
GTTCGAC	20	7.027586E-4	45.0	25
GGACGAT	20	7.027586E-4	45.0	8
ACTAACG	20	7.027586E-4	45.0	16
CGTACGC	20	7.027586E-4	45.0	21
GCGGATA	25	3.8860802E-5	45.0	29
GGACCGT	20	7.027586E-4	45.0	8
CACAACG	20	7.027586E-4	45.0	12
ACGAGCA	25	3.8860802E-5	45.0	12
TCGCGCG	20	7.027586E-4	45.0	1
CTAGCTA	20	7.027586E-4	45.0	10
CGTTTTT	415	0.0	42.289154	1