SRR2933890.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933890.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1100946
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	3848	0.3495175966850327	No Hit
CCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	3741	0.3397986822241963	No Hit
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	3689	0.33507547145818234	No Hit
TCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	2955	0.26840553487637	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1423	0.12925247923149727	No Hit
TCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	1126	0.10227567927945604	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTG	1107	0.10054989073033556	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATTC	25	3.890699E-5	45.0	23
ACTCGTA	45	1.9281288E-8	40.0	11
CGGTAGT	405	0.0	40.0	12
ACGGTTA	90	0.0	40.0	34
GGACCGT	85	0.0	39.705883	8
TCTTGCG	240	0.0	39.375004	1
CGTTAGG	80	0.0	39.375	2
CGTTTTT	1000	0.0	38.925003	1
TTTCTCG	430	0.0	38.720932	1
TCGTTTG	350	0.0	38.57143	1
TACGCGG	35	6.2480485E-6	38.571426	2
TTGGGAC	2005	0.0	38.491272	5
TTTAGCG	130	0.0	38.076927	1
ACGCCGG	345	0.0	37.826084	27
TATCTCG	30	1.13989045E-4	37.500004	1
GCGGATA	30	1.13989045E-4	37.500004	5
GCGCTTA	30	1.13989045E-4	37.500004	43
TTTGGGA	5505	0.0	37.35695	4
CGTTTGG	670	0.0	37.27612	2
TTTGTCG	200	0.0	37.125	1