SRR2933889.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933889.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	344620
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	2018	0.5855725146538215	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	1891	0.5487203296384423	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1570	0.45557425570193255	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1523	0.4419360454993906	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	718	0.20834542394521502	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	647	0.1877430212988219	No Hit
TCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	596	0.1729441123556381	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	586	0.17004236550403343	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	526	0.15263188439440542	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	519	0.15060066159828217	No Hit
GCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	375	0.10881550693517497	No Hit
TGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	363	0.10533341071324938	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCTCG	35	1.2086093E-7	45.000004	1
GCGATCT	95	0.0	45.000004	9
GATCGCT	20	7.0264057E-4	45.0	9
GGATGCG	20	7.0264057E-4	45.0	8
GGATCGC	20	7.0264057E-4	45.0	8
TGCGCAT	20	7.0264057E-4	45.0	13
CGCTCAC	20	7.0264057E-4	45.0	38
CTACGGG	20	7.0264057E-4	45.0	3
GTCGTTG	20	7.0264057E-4	45.0	1
TCGGTCG	20	7.0264057E-4	45.0	2
TAGTCCA	20	7.0264057E-4	45.0	18
CTACGAA	50	2.1827873E-11	44.999996	11
GCGGGTC	30	2.161063E-6	44.999996	5
CGGGACG	30	2.161063E-6	44.999996	6
CGCCGGG	25	3.8851034E-5	44.999996	3
ACATACG	30	2.161063E-6	44.999996	17
AGGGCCG	25	3.8851034E-5	44.999996	6
TGCGGGC	140	0.0	43.39286	4
GGACCGA	180	0.0	42.5	8
CGTTTGG	335	0.0	42.31343	2