##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933889.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 344620 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44620741686495 33.0 31.0 34.0 31.0 34.0 2 32.66360048749347 34.0 31.0 34.0 31.0 34.0 3 32.72446752945273 34.0 31.0 34.0 31.0 34.0 4 36.092002785676975 37.0 35.0 37.0 35.0 37.0 5 36.142940049910045 37.0 35.0 37.0 35.0 37.0 6 35.79781498462074 37.0 35.0 37.0 35.0 37.0 7 36.1288346584644 37.0 35.0 37.0 35.0 37.0 8 36.12927862573269 37.0 37.0 37.0 35.0 37.0 9 37.98288259532239 39.0 39.0 39.0 35.0 39.0 10 37.62855318901979 39.0 37.0 39.0 35.0 39.0 11 37.53935929429517 39.0 37.0 39.0 35.0 39.0 12 37.430111427079105 39.0 37.0 39.0 35.0 39.0 13 37.38220358655911 39.0 37.0 39.0 35.0 39.0 14 38.635813359642505 40.0 38.0 41.0 35.0 41.0 15 38.695818582786835 40.0 38.0 41.0 35.0 41.0 16 38.76079449828797 40.0 38.0 41.0 35.0 41.0 17 38.72447333294643 40.0 38.0 41.0 35.0 41.0 18 38.675277116824326 40.0 38.0 41.0 35.0 41.0 19 38.71990017990831 40.0 38.0 41.0 35.0 41.0 20 38.664642214613195 40.0 38.0 41.0 35.0 41.0 21 38.59317509140502 40.0 38.0 41.0 35.0 41.0 22 38.58735128547386 40.0 38.0 41.0 35.0 41.0 23 38.52281353374732 40.0 38.0 41.0 34.0 41.0 24 38.4867970518252 40.0 38.0 41.0 34.0 41.0 25 38.42104636991469 40.0 38.0 41.0 34.0 41.0 26 38.37912773489641 40.0 38.0 41.0 34.0 41.0 27 38.375143636469154 40.0 38.0 41.0 34.0 41.0 28 38.31811560559457 40.0 37.0 41.0 34.0 41.0 29 38.33274331147351 40.0 37.0 41.0 34.0 41.0 30 38.26117462712553 40.0 37.0 41.0 34.0 41.0 31 38.21757297893332 40.0 37.0 41.0 34.0 41.0 32 38.10689745226627 40.0 37.0 41.0 34.0 41.0 33 38.0163687539899 40.0 37.0 41.0 34.0 41.0 34 38.02615344437351 40.0 37.0 41.0 34.0 41.0 35 37.997373919099296 40.0 37.0 41.0 34.0 41.0 36 37.90254773373571 40.0 37.0 41.0 34.0 41.0 37 37.85333700887934 40.0 37.0 41.0 33.0 41.0 38 37.806824908594976 40.0 37.0 41.0 33.0 41.0 39 37.754370030758515 40.0 37.0 41.0 33.0 41.0 40 37.6841709709245 40.0 36.0 41.0 33.0 41.0 41 37.609717950206026 40.0 36.0 41.0 33.0 41.0 42 37.57315884162266 40.0 36.0 41.0 33.0 41.0 43 37.46284022981835 40.0 36.0 41.0 33.0 41.0 44 37.37194881318554 40.0 36.0 41.0 33.0 41.0 45 37.39473332946434 40.0 36.0 41.0 33.0 41.0 46 37.312433985259126 39.0 35.0 41.0 33.0 41.0 47 37.23567697754048 39.0 35.0 41.0 32.0 41.0 48 37.1997301375428 39.0 35.0 41.0 32.0 41.0 49 37.18170738784748 39.0 35.0 41.0 32.0 41.0 50 37.099550229238 39.0 35.0 41.0 32.0 41.0 51 36.17195751842609 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 8.0 11 6.0 12 5.0 13 4.0 14 2.0 15 3.0 16 5.0 17 12.0 18 31.0 19 60.0 20 136.0 21 191.0 22 352.0 23 481.0 24 682.0 25 1097.0 26 1532.0 27 1882.0 28 2304.0 29 2840.0 30 3491.0 31 4692.0 32 6080.0 33 8794.0 34 16673.0 35 24926.0 36 22454.0 37 35864.0 38 73835.0 39 136080.0 40 94.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.456851024316638 4.345075735592826 55.738784748418546 16.459288491671987 2 18.24067088387209 5.087342580233301 55.6363530845569 21.035633451337706 3 19.482908711044047 5.069641924438512 54.384249318089495 21.063200046427948 4 18.098195113458303 4.454761766583483 53.13881956938077 24.30822355057745 5 17.834716499332597 5.295978178863676 52.780163658522426 24.089141663281296 6 20.977888688990774 6.387615344437352 53.87238117346642 18.76211479310545 7 84.12077070396379 1.9267599094654981 9.336660669723173 4.615808716847543 8 85.64273692763044 2.740699901340607 6.849863617897975 4.766699553130985 9 79.91904126284022 5.344727525970634 9.139051709128895 5.59717950206024 10 35.62416574778016 37.785676977540476 14.773953920259997 11.816203354419361 11 23.941442748534616 23.73803029423713 32.247402936567816 20.073124020660437 12 22.725900992397424 22.633045093146073 33.63095583541292 21.010098079043583 13 21.522256398351807 24.954152399744647 34.50844408333817 19.015147118565377 14 19.072311531541988 27.775230688874704 31.68417387267135 21.46828390691196 15 16.24455922465324 26.962161221055077 36.37136556206836 20.421913992223317 16 18.778364575474434 27.135105333410714 31.965062967906682 22.12146712320817 17 19.401369624513958 25.969183448435956 30.78405199930358 23.8453949277465 18 19.19795717021647 25.71411990017991 32.707910161917475 22.380012767686146 19 20.882711392258138 26.199291973768208 31.049852010910566 21.868144623063085 20 23.299576344959664 26.714352039928034 30.958156810399863 19.027914804712438 21 23.014044454761766 27.721548372120015 30.49068539260635 18.773721780511867 22 21.905867332133944 24.759155011316814 29.95560327317045 23.379374383378796 23 19.871742789159075 26.713481515872555 29.374093204108874 24.040682490859496 24 20.59137600835703 24.49219430096918 31.212930183970748 23.703499506703036 25 18.324531367883466 28.07643201207127 29.002959781788633 24.596076838256632 26 17.76739597237537 28.61180430619233 28.82131042887818 24.799489292554117 27 18.517787708200338 28.236028088909528 31.35482560501422 21.89135859787592 28 16.694039811966803 25.967152225639833 34.85781440427137 22.48099355812199 29 19.17996633973652 23.67506238755731 32.82891300562939 24.31605826707678 30 19.501189716209158 25.040334281237303 33.39011084672973 22.068365155823805 31 21.090766641518194 26.42504787882305 29.183158261273284 23.301027218385467 32 22.063432186176076 27.26974638732517 28.21078289130056 22.45603853519819 33 20.83802449074343 26.75004352620277 29.119900179908303 23.292031803145495 34 20.21095699611166 24.6895130868783 29.58185827868377 25.517671638326274 35 19.650339504381638 24.17909581568104 29.560385351981893 26.61017932795543 36 19.659625094306772 25.72137426730892 31.434623643433348 23.184376994950963 37 19.318089489872904 25.855434971853054 33.114735070512445 21.711740467761594 38 20.277116824328246 26.704776275317744 30.715860948290867 22.302245952063142 39 20.72804828506761 26.116592188497474 30.811908769078983 22.343450757355928 40 21.622076490047007 24.299228135337472 30.54697928152748 23.53171609308804 41 19.96198711624398 24.71911090476467 27.649875224885378 27.669026754105975 42 20.93900528117927 25.44077534675875 28.02855318901979 25.59166618304219 43 21.22424699669201 24.923103708432475 30.281179269920493 23.571470024955023 44 19.520051070744586 24.285589925134932 30.44077534675875 25.753583657361734 45 20.870233880796242 22.818466716963613 29.137600835703093 27.17369856653706 46 21.69781208287389 23.729905403052637 31.124136730311648 23.448145783761827 47 18.648076141837386 23.906041436945042 33.43305670013348 24.012825721084095 48 19.529046485984562 23.518077882885496 32.142940049910045 24.809935581219893 49 21.289826475538273 22.17660031338866 33.67651326098311 22.857059950089955 50 21.099471882073008 22.52539028495154 30.57425570193256 25.80088213104289 51 19.575184260925077 22.391329580407405 28.776913702048635 29.256572456618883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 47.0 1 139.5 2 232.0 3 621.5 4 1011.0 5 707.5 6 404.0 7 418.0 8 432.0 9 484.0 10 536.0 11 601.0 12 666.0 13 670.0 14 674.0 15 719.0 16 764.0 17 772.0 18 780.0 19 787.5 20 795.0 21 1155.0 22 1515.0 23 1633.5 24 1752.0 25 2246.5 26 3428.5 27 4116.0 28 4588.0 29 5060.0 30 6040.5 31 7021.0 32 8151.0 33 9281.0 34 10362.0 35 11443.0 36 11673.0 37 11903.0 38 14116.0 39 16329.0 40 17732.5 41 19136.0 42 21503.5 43 23871.0 44 25828.5 45 27786.0 46 32806.5 47 37827.0 48 40385.5 49 42944.0 50 40220.0 51 37496.0 52 30505.0 53 23514.0 54 19670.0 55 15826.0 56 13636.0 57 11446.0 58 10397.0 59 9348.0 60 7964.5 61 6581.0 62 5419.0 63 4257.0 64 3607.0 65 2957.0 66 2359.0 67 1761.0 68 1350.5 69 940.0 70 794.5 71 649.0 72 498.5 73 348.0 74 275.0 75 164.0 76 126.0 77 95.0 78 64.0 79 49.5 80 35.0 81 18.5 82 2.0 83 2.0 84 2.0 85 1.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 344620.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.0341933058642 #Duplication Level Percentage of deduplicated Percentage of total 1 71.96564792403271 25.932240686763592 2 11.429663006950415 8.237173724266727 3 4.123785707207727 4.457918739764494 4 2.0382887787620887 2.937923674683479 5 1.243257210714719 2.2399885329901865 6 0.8467161651895011 1.8306440382983118 7 0.6794884755924641 1.7139373355024086 8 0.6310344264513515 1.819105320432252 9 0.5777676723479868 1.8737452792139908 >10 6.344117438983226 41.803162854899206 >50 0.07343101095887396 1.8170356313036613 >100 0.038732840945340116 2.2566832348452097 >500 0.0048416051181675145 1.044453830635742 >1k 0.003227736745445009 2.035987116400742 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC 2018 0.5855725146538215 No Hit CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT 1891 0.5487203296384423 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC 1570 0.45557425570193255 No Hit TCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC 1523 0.4419360454993906 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC 718 0.20834542394521502 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC 647 0.1877430212988219 No Hit TCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG 596 0.1729441123556381 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 586 0.17004236550403343 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG 526 0.15263188439440542 No Hit CGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG 519 0.15060066159828217 No Hit GCCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG 375 0.10881550693517497 No Hit TGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG 363 0.10533341071324938 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.901746851604666E-4 0.0 0.0 0.5780279728396495 0.0 2 2.901746851604666E-4 0.0 0.0 2.170796819685451 0.0 3 2.901746851604666E-4 0.0 0.0 3.0810748070338345 0.0 4 2.901746851604666E-4 0.0 0.0 4.0090534501770065 0.0 5 2.901746851604666E-4 0.0 0.0 5.550751552434566 0.0 6 2.901746851604666E-4 0.0 0.0 6.283732807149904 0.0 7 2.901746851604666E-4 0.0 0.0 7.0422494341593636 0.0 8 2.901746851604666E-4 0.0 0.0 8.21513551157797 0.0 9 2.901746851604666E-4 0.0 0.0 8.70727177761012 0.0 10 2.901746851604666E-4 0.0 0.0 9.86971156636295 0.0 11 2.901746851604666E-4 0.0 0.0 12.005977598514306 0.0 12 2.901746851604666E-4 0.0 0.0 14.25976437815565 0.0 13 2.901746851604666E-4 0.0 0.0 14.90105043236028 0.0 14 2.901746851604666E-4 0.0 0.0 15.091114851140386 0.0 15 2.901746851604666E-4 0.0 0.0 15.413789101038825 0.0 16 2.901746851604666E-4 0.0 0.0 16.11398061633103 0.0 17 2.901746851604666E-4 0.0 0.0 17.177761012129302 0.0 18 2.901746851604666E-4 0.0 0.0 18.344843595844697 0.0 19 2.901746851604666E-4 0.0 0.0 19.3166386164471 0.0 20 2.901746851604666E-4 0.0 0.0 20.277116824328246 0.0 21 2.901746851604666E-4 0.0 0.0 21.55997910742267 0.0 22 2.901746851604666E-4 0.0 0.0 22.909581568104 0.0 23 2.901746851604666E-4 0.0 0.0 24.12222157738959 0.0 24 2.901746851604666E-4 0.0 0.0 25.020892577331555 0.0 25 2.901746851604666E-4 0.0 0.0 25.82148453368928 0.0 26 2.901746851604666E-4 0.0 0.0 26.468574081597122 0.0 27 2.901746851604666E-4 0.0 0.0 27.132783935929428 0.0 28 2.901746851604666E-4 0.0 0.0 27.84226104114677 0.0 29 2.901746851604666E-4 0.0 0.0 28.561313910974405 0.0 30 2.901746851604666E-4 0.0 0.0 29.475654343915036 0.0 31 5.803493703209332E-4 0.0 0.0 30.2869827636237 0.0 32 5.803493703209332E-4 0.0 0.0 31.044048517207358 0.0 33 5.803493703209332E-4 0.0 0.0 31.76658348325692 0.0 34 5.803493703209332E-4 0.0 0.0 32.45719923393883 0.0 35 5.803493703209332E-4 0.0 0.0 33.20265800011607 0.0 36 5.803493703209332E-4 0.0 0.0 33.93186698392432 0.0 37 5.803493703209332E-4 0.0 0.0 34.61290696999594 0.0 38 5.803493703209332E-4 0.0 0.0 35.35430329058093 0.0 39 5.803493703209332E-4 0.0 0.0 36.06494109453891 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCCTCG 35 1.2086093E-7 45.000004 1 GCGATCT 95 0.0 45.000004 9 GATCGCT 20 7.0264057E-4 45.0 9 GGATGCG 20 7.0264057E-4 45.0 8 GGATCGC 20 7.0264057E-4 45.0 8 TGCGCAT 20 7.0264057E-4 45.0 13 CGCTCAC 20 7.0264057E-4 45.0 38 CTACGGG 20 7.0264057E-4 45.0 3 GTCGTTG 20 7.0264057E-4 45.0 1 TCGGTCG 20 7.0264057E-4 45.0 2 TAGTCCA 20 7.0264057E-4 45.0 18 CTACGAA 50 2.1827873E-11 44.999996 11 GCGGGTC 30 2.161063E-6 44.999996 5 CGGGACG 30 2.161063E-6 44.999996 6 CGCCGGG 25 3.8851034E-5 44.999996 3 ACATACG 30 2.161063E-6 44.999996 17 AGGGCCG 25 3.8851034E-5 44.999996 6 TGCGGGC 140 0.0 43.39286 4 GGACCGA 180 0.0 42.5 8 CGTTTGG 335 0.0 42.31343 2 >>END_MODULE