SRR2933888.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933888.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	381027
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	2644	0.6939140795796623	No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1753	0.4600723833219168	No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT	1503	0.39446023510144956	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	1328	0.3485317313471224	No Hit
TCCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	679	0.17820259456678922	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	651	0.17085403396609689	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	624	0.16376792195828643	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCT	452	0.11862676398260491	No Hit
GCCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	436	0.11442758649649501	No Hit
TGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG	420	0.11022840901038508	No Hit
TTTTCGGGGGCCCTAAACAGGCAGAACTACTGAAGATGCCTTAAAATATAT	385	0.10104270825951966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGG	20	7.027342E-4	45.000004	2
CACGGAT	20	7.027342E-4	45.000004	21
TGGGTCG	40	6.7939254E-9	45.000004	6
TGGCGAT	20	7.027342E-4	45.000004	21
TTCGTCG	35	1.209064E-7	45.000004	1
ACGGGGC	20	7.027342E-4	45.000004	5
ACGGGAG	30	2.161667E-6	45.000004	5
TATTGCG	30	2.161667E-6	45.000004	1
TGTTGCG	20	7.027342E-4	45.000004	1
AGTTGTC	20	7.027342E-4	45.000004	24
TTGACGG	20	7.027342E-4	45.000004	2
CGGGCTT	30	2.161667E-6	45.000004	6
TGTTCGC	20	7.027342E-4	45.000004	11
CGGGCTA	65	0.0	45.000004	6
GCTAGCG	20	7.027342E-4	45.000004	23
TACTAGC	20	7.027342E-4	45.000004	41
ATACGGT	20	7.027342E-4	45.000004	21
ACGAGGC	20	7.027342E-4	45.000004	24
ATGTTCG	20	7.027342E-4	45.000004	10
CCGCAAC	20	7.027342E-4	45.000004	25