SRR2933887.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933887.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1312728
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	3687	0.2808654953653765	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGCT	3499	0.2665441736597376	Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	3151	0.24003449305568253	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	2954	0.2250275761620077	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	2235	0.1702561383622502	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	2103	0.1602007422710569	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1942	0.1479362061295257	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	1825	0.13902346868505888	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1563	0.11906503098890249	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGCG	320	0.0	40.78125	1
CGTTTTT	1330	0.0	39.924812	1
TTACACG	225	0.0	39.0	34
TTTGGGA	7355	0.0	38.698166	4
TTGGGAC	2555	0.0	38.659492	5
GGTACGA	35	6.248969E-6	38.571426	8
TCGTTTG	360	0.0	38.125	1
ACATACG	130	0.0	38.07692	17
TAGCGGG	285	0.0	37.894737	3
GCGATTG	315	0.0	37.857143	9
TGGGCGA	1415	0.0	37.844524	6
CATACGA	125	0.0	37.8	18
CGTTACA	30	1.1400102E-4	37.500004	34
ATATCGT	30	1.1400102E-4	37.500004	18
TAGGCGT	30	1.1400102E-4	37.500004	36
TAGGCGA	30	1.1400102E-4	37.500004	19
CGTTTGG	725	0.0	37.241383	2
TCGTTCG	85	0.0	37.058823	1
GGGCGAT	1960	0.0	36.964287	7
TTTCTCG	420	0.0	36.964283	1