SRR2933882.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933882.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1400004
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6379	0.45564155530984196	No Hit
CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	4244	0.3031419910228828	Illumina PCR Primer Index 5 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT	3565	0.2546421295939154	Illumina PCR Primer Index 5 (96% over 26bp)
GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	2812	0.20085656898123147	RNA PCR Primer, Index 33 (96% over 27bp)
TCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC	2338	0.1669995228585061	RNA PCR Primer, Index 33 (96% over 27bp)
CGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG	1990	0.14214245102156853	Illumina PCR Primer Index 5 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC	1803	0.12878534632758193	Illumina PCR Primer Index 5 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1789	0.12778534918471662	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGC	1544	0.11028539918457375	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1449	0.10349970428655919	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCG	1445	0.10321399081716909	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGGG	20	7.033813E-4	45.000004	3
GCGATCG	30	2.1658416E-6	45.000004	9
TCGACAC	20	7.033813E-4	45.000004	20
TTATGCG	50	2.1827873E-11	45.0	1
CGTTTTT	3105	0.0	43.4058	1
TATCCGG	50	1.0822987E-9	40.5	2
CGTTAGG	95	0.0	40.263157	2
TTGGGAT	3630	0.0	38.367767	5
TGGGCGA	1555	0.0	38.19936	6
TTTGGGA	7045	0.0	37.973743	4
TCGTTAG	60	1.5643309E-10	37.500004	1
TTTGGGC	2400	0.0	37.5	4
TTTTGCG	1190	0.0	37.2479	1
GGGCGAT	2330	0.0	37.178112	7
TATTGCG	85	0.0	37.058823	1
TTGGGAG	4150	0.0	36.759037	5
TAATCGT	80	0.0	36.562504	21
TTGTTCG	340	0.0	36.397057	1
GACCGAT	650	0.0	36.346153	9
TCTGGGA	3465	0.0	36.23377	4