##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933882.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1400004 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50600355427556 33.0 31.0 34.0 31.0 34.0 2 32.74113716817952 34.0 31.0 34.0 31.0 34.0 3 32.78521061368396 34.0 31.0 34.0 31.0 34.0 4 36.14187745177871 37.0 35.0 37.0 35.0 37.0 5 36.166051668423805 37.0 35.0 37.0 35.0 37.0 6 35.79349273287791 37.0 35.0 37.0 35.0 37.0 7 36.091516167096664 37.0 35.0 37.0 35.0 37.0 8 36.10607326836209 37.0 37.0 37.0 35.0 37.0 9 37.9597358293262 39.0 38.0 39.0 35.0 39.0 10 37.70612369678944 39.0 37.0 39.0 35.0 39.0 11 37.63612818249091 39.0 37.0 39.0 35.0 39.0 12 37.33905903125991 39.0 37.0 39.0 35.0 39.0 13 37.21391081739767 39.0 37.0 39.0 34.0 39.0 14 38.14835386184611 40.0 38.0 41.0 33.0 41.0 15 38.29566486952894 40.0 38.0 41.0 33.0 41.0 16 38.47614435387327 40.0 38.0 41.0 34.0 41.0 17 38.49019645658155 40.0 38.0 41.0 34.0 41.0 18 38.4350123285362 40.0 37.0 41.0 34.0 41.0 19 38.429084488330034 40.0 37.0 41.0 34.0 41.0 20 38.309239116459665 40.0 37.0 41.0 34.0 41.0 21 38.2419078802632 40.0 37.0 41.0 34.0 41.0 22 38.29823343361876 40.0 37.0 41.0 34.0 41.0 23 38.25912783106334 40.0 36.0 41.0 34.0 41.0 24 38.22455292984877 40.0 36.0 41.0 34.0 41.0 25 38.12952891563167 40.0 36.0 41.0 34.0 41.0 26 38.05277699206574 40.0 36.0 41.0 34.0 41.0 27 38.02595206870838 40.0 36.0 41.0 34.0 41.0 28 37.942393021734226 40.0 36.0 41.0 34.0 41.0 29 37.84958828689061 40.0 35.0 41.0 34.0 41.0 30 37.7681285196328 40.0 35.0 41.0 34.0 41.0 31 37.642397450293 40.0 35.0 41.0 33.0 41.0 32 37.4912078822632 40.0 35.0 41.0 33.0 41.0 33 37.39938100176857 40.0 35.0 41.0 33.0 41.0 34 37.272142793877734 40.0 35.0 41.0 33.0 41.0 35 37.15693312304822 39.0 35.0 41.0 32.0 41.0 36 37.08385261756395 39.0 35.0 41.0 32.0 41.0 37 36.99692358021834 39.0 35.0 41.0 32.0 41.0 38 36.907988834317614 39.0 35.0 41.0 32.0 41.0 39 36.8409740257885 39.0 35.0 41.0 32.0 41.0 40 36.758265690669454 39.0 35.0 41.0 31.0 41.0 41 36.639071031225626 39.0 35.0 41.0 31.0 41.0 42 36.66174382358908 39.0 35.0 41.0 31.0 41.0 43 36.57524407073122 39.0 35.0 41.0 31.0 41.0 44 36.47980005771412 39.0 35.0 41.0 31.0 41.0 45 36.46666509524258 39.0 35.0 41.0 31.0 41.0 46 36.41938165890954 38.0 35.0 41.0 31.0 41.0 47 36.333580475484354 38.0 35.0 41.0 31.0 41.0 48 36.249930714483675 38.0 35.0 40.0 31.0 41.0 49 36.22094079731201 38.0 35.0 40.0 31.0 41.0 50 36.1353124705358 38.0 35.0 40.0 31.0 41.0 51 35.15849311859109 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 25.0 10 26.0 11 20.0 12 17.0 13 14.0 14 28.0 15 43.0 16 94.0 17 169.0 18 229.0 19 443.0 20 739.0 21 1256.0 22 1928.0 23 2864.0 24 4317.0 25 6893.0 26 9782.0 27 11298.0 28 12598.0 29 14223.0 30 17322.0 31 22560.0 32 30941.0 33 48659.0 34 100541.0 35 103071.0 36 99986.0 37 158742.0 38 293962.0 39 456884.0 40 327.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.67936091611167 4.600915425955926 54.57541549881286 17.144308159119547 2 20.8969402944563 5.111128253919275 52.90449170145229 21.087439750172145 3 21.037725606498267 4.990057171265224 51.801923423075934 22.17029379916057 4 19.51515852811849 4.927200207999405 51.22435364470387 24.333287619178233 5 19.54972985791469 6.033268476375782 49.48878717489379 24.92821449081574 6 22.05136556752695 6.750909283116334 52.33463618675375 18.863088962602966 7 82.46905008842832 2.5605641126739638 10.347256150696712 4.6231296482010045 8 84.28940203027992 3.319633372476079 8.19333373333219 4.197630863911817 9 78.0985625755355 5.532341336167611 10.505541412738822 5.86355467555807 10 41.030668483804334 28.237062179822342 16.968094376873207 13.764174959500117 11 33.44140445313013 22.58086405467413 25.35999897143151 18.61773252076423 12 30.207056551266998 20.122013937103038 28.979631486767182 20.691298024862785 13 27.540207027979918 20.150728140776742 31.67919520229942 20.62986962894392 14 21.092582592621163 22.036722752220708 34.25533069905515 22.615363956102982 15 19.210087971177224 22.97579149773858 36.17789663458104 21.636223896503154 16 25.60764112102537 22.87022037079894 30.21734223616504 21.304796272010652 17 26.095639726743634 23.80214627958206 28.16577666920952 21.936437324464787 18 26.4497101436853 22.235150756712123 30.328484775757786 20.98665432384479 19 26.014997100008287 24.52435850183285 27.704920843083304 21.755723555075555 20 24.965571526938493 27.8347776149211 28.239490744312157 18.960160113828245 21 25.19121373938932 25.51906994551444 30.55419841657595 18.73551789852029 22 23.749146431010196 22.124079645486727 31.922908791689164 22.20386513181391 23 22.553864131816766 23.73786074896929 31.38655318127663 22.32172193793732 24 23.1784337759035 24.712786534895613 29.82012908534547 22.288650603855416 25 24.139145316727667 25.68535518469947 26.762494964300103 23.413004534272762 26 21.872437507321408 25.48649861000397 27.092422593078307 25.548641289596315 27 21.889794600586857 24.234002188565178 30.390627455350128 23.48557575549784 28 20.160728112205394 25.257499264287812 29.112488250033568 25.469284373473215 29 22.14336530467056 25.91835451898709 28.201847994720016 23.736432181622337 30 25.869497515721385 24.096716866523238 28.591775452070138 21.44201016568524 31 25.343213305104843 24.81671480938626 28.658060976968635 21.18201090854026 32 26.657852406135984 24.32964477244351 27.19527944205874 21.81722337936177 33 27.301493424304503 23.385218899374575 26.71128082491193 22.602006851408994 34 22.879577486921466 24.432644478158632 30.19627086779752 22.49150716712238 35 22.36957894406016 27.046422724506503 28.603132562478393 21.980865768954946 36 25.78106919694515 26.892280307770548 25.889140316741955 21.437510178542347 37 23.96000297142008 27.28835060471256 27.040279884914614 21.711366538952745 38 24.627286779180633 25.06085696898009 28.163633818189094 22.14822243365019 39 23.406147411007396 24.0718597946863 27.527421350224714 24.99457144408159 40 25.433998760003547 23.576789780600627 28.554918414518816 22.434293044877016 41 21.320224799357714 24.606072554078416 27.97513435675898 26.098568289804884 42 21.459724400787426 22.868363233247905 30.241842166165238 25.43007019979943 43 22.207650835283328 22.741006454267275 29.946200153713846 25.105142556735554 44 23.463290104885417 22.794577729777917 28.34013331390482 25.401998851431852 45 22.654578129776773 22.937291607738263 26.9037802749135 27.504349987571462 46 22.74400644569587 23.85307470550084 28.283062048394147 25.119856800409142 47 20.782654906700266 24.504358558975543 31.38848174719501 23.32450478712918 48 21.301867708949406 25.161785252042137 30.084056902694563 23.4522901363139 49 24.027288493461445 22.611292539164175 29.982914334530474 23.378504632843907 50 22.004865700383714 23.686075182642334 28.785489184316614 25.523569932657335 51 20.867440378741776 23.689646601009713 27.872777506349983 27.57013551389853 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 267.0 1 869.0 2 1471.0 3 5984.0 4 10497.0 5 6861.5 6 3226.0 7 3225.5 8 3225.0 9 3331.0 10 3437.0 11 3301.5 12 3166.0 13 3012.0 14 2858.0 15 2784.0 16 2710.0 17 2849.5 18 2989.0 19 3000.0 20 3011.0 21 3490.5 22 3970.0 23 4733.5 24 5497.0 25 6820.5 26 9695.5 27 11247.0 28 13642.5 29 16038.0 30 18243.0 31 20448.0 32 24499.5 33 28551.0 34 32490.5 35 36430.0 36 39061.5 37 41693.0 38 45093.5 39 48494.0 40 52200.5 41 55907.0 42 61804.0 43 67701.0 44 73674.0 45 79647.0 46 95006.0 47 110365.0 48 122672.0 49 134979.0 50 135847.0 51 136715.0 52 122350.5 53 107986.0 54 99348.0 55 90710.0 56 86301.5 57 81893.0 58 77393.0 59 72893.0 60 65416.0 61 57939.0 62 51288.5 63 44638.0 64 38747.0 65 32856.0 66 27683.0 67 22510.0 68 19695.5 69 16881.0 70 14098.5 71 11316.0 72 9596.0 73 7876.0 74 6326.5 75 3683.0 76 2589.0 77 1932.5 78 1276.0 79 966.0 80 656.0 81 470.0 82 284.0 83 237.0 84 190.0 85 104.5 86 19.0 87 14.5 88 10.0 89 7.0 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 8.5 96 16.0 97 8.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1400004.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.786509862601168 #Duplication Level Percentage of deduplicated Percentage of total 1 72.14585755505747 21.48973297609539 2 10.559282688314633 6.290483558749553 3 3.877977989485025 3.465342888922379 4 1.900079595516805 2.263869584463542 5 1.246436514236402 1.8563496762204403 6 0.8655370443801089 1.5468796625324868 7 0.6654091495696677 1.387415133742537 8 0.5355484586994386 1.2761695557561346 9 0.5033389491517992 1.349343951582724 >10 7.4558120029884485 49.575622868116795 >50 0.18403307035817315 3.5513225383056213 >100 0.05415890070861911 2.942802078224296 >500 0.002901369570403802 0.5680784659823294 >1k 0.0033849311654711024 1.9771838495282543 >5k 2.4178079753365018E-4 0.4594032117775455 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6379 0.45564155530984196 No Hit CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 4244 0.3031419910228828 Illumina PCR Primer Index 5 (96% over 25bp) CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT 3565 0.2546421295939154 Illumina PCR Primer Index 5 (96% over 26bp) GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 2812 0.20085656898123147 RNA PCR Primer, Index 33 (96% over 27bp) TCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 2338 0.1669995228585061 RNA PCR Primer, Index 33 (96% over 27bp) CGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 1990 0.14214245102156853 Illumina PCR Primer Index 5 (95% over 24bp) GAATCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC 1803 0.12878534632758193 Illumina PCR Primer Index 5 (95% over 22bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1789 0.12778534918471662 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGC 1544 0.11028539918457375 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 1449 0.10349970428655919 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCG 1445 0.10321399081716909 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.142836734752186E-5 0.0 0.0 0.2659278116348239 0.0 2 7.142836734752186E-5 0.0 0.0 0.9892114593958303 0.0 3 7.142836734752186E-5 0.0 0.0 1.4730672198079433 0.0 4 7.142836734752186E-5 0.0 0.0 1.982851477567207 0.0 5 7.142836734752186E-5 0.0 0.0 3.0412055965554385 0.0 6 7.142836734752186E-5 0.0 0.0 3.919060231256482 0.0 7 7.142836734752186E-5 0.0 0.0 4.680843769017803 0.0 8 7.142836734752186E-5 0.0 0.0 5.745697869434658 0.0 9 7.142836734752186E-5 0.0 0.0 6.399910285970612 0.0 10 7.142836734752186E-5 0.0 0.0 7.457407264550673 0.0 11 7.142836734752186E-5 0.0 0.0 8.990760026399924 0.0 12 7.142836734752186E-5 0.0 0.0 10.375184642329593 0.0 13 7.142836734752186E-5 0.0 0.0 10.845611869680372 0.0 14 7.142836734752186E-5 0.0 0.0 11.082182622335365 0.0 15 7.142836734752186E-5 0.0 0.0 11.364610386827467 0.0 16 7.142836734752186E-5 0.0 0.0 11.86918037377036 0.0 17 7.142836734752186E-5 0.0 0.0 12.529178488061463 0.0 18 7.142836734752186E-5 0.0 0.0 13.216033668475234 0.0 19 7.142836734752186E-5 0.0 0.0 13.764317816234811 0.0 20 7.142836734752186E-5 0.0 0.0 14.374887500321428 0.0 21 7.142836734752186E-5 0.0 0.0 15.221742223593647 0.0 22 7.142836734752186E-5 0.0 0.0 16.119953942988733 0.0 23 7.142836734752186E-5 0.0 0.0 16.910808826260496 0.0 24 7.142836734752186E-5 0.0 0.0 17.518378518918517 0.0 25 7.142836734752186E-5 0.0 0.0 18.089448315861954 0.0 26 7.142836734752186E-5 0.0 0.0 18.600018285662042 0.0 27 7.142836734752186E-5 0.0 0.0 19.21508795689155 0.0 28 1.4285673469504372E-4 0.0 0.0 19.755657840977598 0.0 29 1.4285673469504372E-4 0.0 0.0 20.35908468832946 0.0 30 1.4285673469504372E-4 0.0 0.0 21.10765397813149 0.0 31 1.4285673469504372E-4 0.0 0.0 21.679009488544317 0.0 32 1.4285673469504372E-4 0.0 0.0 22.23500789997743 0.0 33 1.4285673469504372E-4 0.0 0.0 22.787720606512554 0.0 34 1.4285673469504372E-4 0.0 0.0 23.379718915088812 0.0 35 1.4285673469504372E-4 0.0 0.0 24.02607421121654 0.0 36 1.4285673469504372E-4 0.0 0.0 24.57678692346593 0.0 37 1.4285673469504372E-4 0.0 0.0 25.15907097408293 0.0 38 1.4285673469504372E-4 0.0 0.0 25.864497530007057 0.0 39 1.4285673469504372E-4 0.0 0.0 27.196136582466906 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGGG 20 7.033813E-4 45.000004 3 GCGATCG 30 2.1658416E-6 45.000004 9 TCGACAC 20 7.033813E-4 45.000004 20 TTATGCG 50 2.1827873E-11 45.0 1 CGTTTTT 3105 0.0 43.4058 1 TATCCGG 50 1.0822987E-9 40.5 2 CGTTAGG 95 0.0 40.263157 2 TTGGGAT 3630 0.0 38.367767 5 TGGGCGA 1555 0.0 38.19936 6 TTTGGGA 7045 0.0 37.973743 4 TCGTTAG 60 1.5643309E-10 37.500004 1 TTTGGGC 2400 0.0 37.5 4 TTTTGCG 1190 0.0 37.2479 1 GGGCGAT 2330 0.0 37.178112 7 TATTGCG 85 0.0 37.058823 1 TTGGGAG 4150 0.0 36.759037 5 TAATCGT 80 0.0 36.562504 21 TTGTTCG 340 0.0 36.397057 1 GACCGAT 650 0.0 36.346153 9 TCTGGGA 3465 0.0 36.23377 4 >>END_MODULE