SRR2933879.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933879.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	457891
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	2445	0.5339698749265656	TruSeq Adapter, Index 22 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT	2030	0.4433369513705227	TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1957	0.4273942925281344	TruSeq Adapter, Index 22 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1842	0.40227914503670087	TruSeq Adapter, Index 22 (95% over 23bp)
TCCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG	757	0.16532318826969736	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	672	0.14675981838472474	No Hit
GCCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG	527	0.11509289328683027	TruSeq Adapter, Index 22 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG	519	0.11334575259177401	No Hit
TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA	507	0.11072504154918965	No Hit
TGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG	483	0.1054836194640209	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	40	6.7993824E-9	45.000004	1
ACGCCGA	20	7.0288347E-4	45.000004	42
ATTAGCC	20	7.0288347E-4	45.000004	22
CGTTGAA	20	7.0288347E-4	45.000004	18
CCGGACC	20	7.0288347E-4	45.000004	14
AAACGCA	30	2.1626292E-6	45.000004	15
TACGCTA	20	7.0288347E-4	45.000004	14
TCTACGG	30	2.1626292E-6	45.000004	2
TCTACGC	20	7.0288347E-4	45.000004	12
CGTAGGC	20	7.0288347E-4	45.000004	33
AGTTCGT	20	7.0288347E-4	45.000004	29
ATGGTAC	20	7.0288347E-4	45.000004	17
CTCGAGC	20	7.0288347E-4	45.000004	14
TGGATCG	20	7.0288347E-4	45.000004	34
CCCGATA	20	7.0288347E-4	45.000004	24
GCGAGGT	20	7.0288347E-4	45.000004	21
CGGAATG	35	1.2097917E-7	45.0	6
ACACGCG	25	3.8871167E-5	45.0	11
GCGACCG	25	3.8871167E-5	45.0	31
GACCGTT	25	3.8871167E-5	45.0	1