##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933879.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 457891 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.439148181554124 33.0 31.0 34.0 31.0 34.0 2 32.66686394797015 34.0 31.0 34.0 31.0 34.0 3 32.73343219237766 34.0 31.0 34.0 31.0 34.0 4 36.0871408260918 37.0 35.0 37.0 35.0 37.0 5 36.12126029994038 37.0 35.0 37.0 35.0 37.0 6 35.771292731239534 37.0 35.0 37.0 35.0 37.0 7 36.06422489195027 37.0 35.0 37.0 35.0 37.0 8 36.06861895079833 37.0 36.0 37.0 35.0 37.0 9 37.92311488978818 39.0 38.0 39.0 35.0 39.0 10 37.6240502652378 39.0 37.0 39.0 35.0 39.0 11 37.52580199217718 39.0 37.0 39.0 35.0 39.0 12 37.28271138764466 39.0 37.0 39.0 35.0 39.0 13 37.157480710474765 39.0 37.0 39.0 34.0 39.0 14 38.36131743144111 40.0 38.0 41.0 34.0 41.0 15 38.455590959420476 40.0 38.0 41.0 34.0 41.0 16 38.538789799319055 40.0 38.0 41.0 35.0 41.0 17 38.508872198842084 40.0 38.0 41.0 35.0 41.0 18 38.47399053486529 40.0 37.0 41.0 35.0 41.0 19 38.503021461439516 40.0 37.0 41.0 35.0 41.0 20 38.450511147849596 40.0 37.0 41.0 34.0 41.0 21 38.365139301711544 40.0 37.0 41.0 34.0 41.0 22 38.343184294952295 40.0 37.0 41.0 34.0 41.0 23 38.30068291361918 40.0 37.0 41.0 34.0 41.0 24 38.28061481881059 40.0 37.0 41.0 34.0 41.0 25 38.1923667423033 40.0 37.0 41.0 34.0 41.0 26 38.10310969204461 40.0 37.0 41.0 34.0 41.0 27 38.104610049116495 40.0 36.0 41.0 34.0 41.0 28 38.05008178802379 40.0 36.0 41.0 34.0 41.0 29 38.011133654079245 40.0 36.0 41.0 34.0 41.0 30 37.97725877992797 40.0 36.0 41.0 34.0 41.0 31 37.896431683522934 40.0 36.0 41.0 34.0 41.0 32 37.80940442157631 40.0 36.0 41.0 34.0 41.0 33 37.746872072174384 40.0 36.0 41.0 33.0 41.0 34 37.69960973244724 40.0 36.0 41.0 33.0 41.0 35 37.64816954253305 40.0 36.0 41.0 33.0 41.0 36 37.563503104450625 40.0 35.0 41.0 33.0 41.0 37 37.51222015719898 40.0 35.0 41.0 33.0 41.0 38 37.4763710140623 40.0 35.0 41.0 33.0 41.0 39 37.455820271636696 40.0 35.0 41.0 33.0 41.0 40 37.3338261726044 39.0 35.0 41.0 33.0 41.0 41 37.22871818838981 39.0 35.0 41.0 33.0 41.0 42 37.20886411831637 39.0 35.0 41.0 33.0 41.0 43 37.10194347563066 39.0 35.0 41.0 33.0 41.0 44 36.98904105999026 39.0 35.0 41.0 32.0 41.0 45 36.98359871672516 39.0 35.0 41.0 32.0 41.0 46 36.90311231275565 39.0 35.0 41.0 32.0 41.0 47 36.841726524434854 39.0 35.0 41.0 32.0 41.0 48 36.80908556839947 39.0 35.0 41.0 32.0 41.0 49 36.81503239854026 39.0 35.0 41.0 32.0 41.0 50 36.72469648890238 39.0 35.0 41.0 32.0 41.0 51 35.788574136639504 38.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 12.0 10 17.0 11 18.0 12 11.0 13 3.0 14 14.0 15 11.0 16 21.0 17 18.0 18 60.0 19 83.0 20 180.0 21 297.0 22 473.0 23 713.0 24 1064.0 25 1602.0 26 2191.0 27 2682.0 28 3170.0 29 3957.0 30 5093.0 31 6513.0 32 8870.0 33 13307.0 34 27535.0 35 39985.0 36 32264.0 37 51385.0 38 97675.0 39 158583.0 40 82.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.97380817705524 4.453898416872137 55.23126682987872 17.341026576193897 2 18.829372055794938 4.76816534939538 54.01853279492281 22.38392979988687 3 20.8923084314826 4.92518961936356 51.41070691496448 22.77179503418936 4 19.453756461690663 4.673601359275461 51.272246014881276 24.600396164152606 5 18.352839431218346 6.21021160057743 49.360218916729096 26.076730051475135 6 22.14260599138223 6.596111301597979 51.79049162355233 19.47079108346746 7 82.803549316322 2.822724185450249 8.993843512975795 5.379882985251949 8 84.03637546927108 3.0723469122564104 7.153230790734039 5.738046827738479 9 78.49924982146406 5.586919157616114 9.842517105599367 6.071313915320458 10 41.92941114806799 25.661565743812393 16.580801981257547 15.828221126862069 11 29.972417016276797 23.382857492285282 25.47221937098567 21.172506120452248 12 26.858793905099688 21.3201395091845 30.409202190040862 21.411864395674954 13 23.83667728782614 23.92447110775272 31.728730199982092 20.510121404439047 14 19.859093102943714 26.19182294476196 31.4175207636752 22.531563188619124 15 17.29581931070932 24.761569893271542 36.87427793950962 21.06833285650952 16 19.916311960706807 24.053977911773764 32.72329004064286 23.30642008687657 17 20.810411211401842 23.63772164117661 29.368343120961104 26.183524026460447 18 21.789246785807105 23.482007726729723 31.19738103609811 23.531364451365064 19 24.03017311980362 24.300324749776696 29.47666584405459 22.192836286365093 20 25.391850899013086 24.953318584553966 29.151042497013478 20.50378801941947 21 25.198791852209368 25.484667748437946 29.11020308326654 20.20633731608614 22 22.523045877730727 23.538134621558406 29.285135545359047 24.65368395535182 23 22.441585442823726 24.598430630870666 28.13879285681527 24.821191069490336 24 22.233894092698918 22.920301993269142 30.15979785582158 24.68600605821036 25 20.545501003513937 25.106848573132034 28.775844032750154 25.57180639060388 26 19.5627343625448 28.745050677999785 28.08572345820293 23.60649150125248 27 20.100853696622124 27.24403842835959 29.467711747992425 23.187396127025863 28 17.453717151025025 25.602599745354244 33.162477532862624 23.781205570758107 29 18.61097946891291 24.566108528012126 31.515579035185233 25.30733296788974 30 21.98034029932888 24.497096470557402 30.132498782461326 23.39006444765239 31 21.872454361409158 25.815532517564222 28.466381737138313 23.845631383888303 32 22.396159784752268 25.897429737644984 26.082408258734063 25.62400221886868 33 22.553184054720447 24.54907390623533 27.447580319333643 25.450161719710586 34 19.799908711898684 24.62332738577522 30.142981626631666 25.433782275694433 35 19.757322157456684 24.521338047701306 28.24973629095134 27.471603503890663 36 22.28805545424566 24.946766806947505 28.91539689576777 23.849780843039063 37 19.76300036471562 24.598212238283786 32.046273021308565 23.59251437569203 38 19.72849433598826 25.38289680295092 28.044884044455998 26.843724816604826 39 22.025110779639697 23.10418855142381 28.789165980549956 26.081534688386537 40 23.304454553594635 22.85784171342088 29.598092122360995 24.239611610623488 41 18.671037430305464 23.37106429259365 29.148421785970896 28.80947649112999 42 20.578041498959358 23.311006331201092 27.742191919037502 28.368760250802044 43 20.943849081986762 22.518896418579967 29.430585008222483 27.106669491210788 44 20.621501623748884 22.676794258895676 29.28185965655582 27.419844460799624 45 20.583938098805174 23.72704420921136 28.033964415111896 27.655053276871573 46 21.599682020393498 23.59316955345268 30.48105335112505 24.32609507502877 47 19.0789947826011 22.33304432714336 32.54988632665853 26.038074563597014 48 18.94664887495059 22.10962871076304 31.49330299132326 27.450419422963108 49 20.771100545763073 20.633513216027396 32.66585279029289 25.92953344791664 50 20.622811979270175 21.25440334053301 30.139487345241555 27.983297334955264 51 19.600079494901625 21.76522360125008 27.575558375246512 31.05913852860179 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 63.0 1 201.5 2 340.0 3 811.0 4 1282.0 5 883.5 6 485.0 7 535.5 8 586.0 9 658.5 10 731.0 11 718.5 12 706.0 13 742.0 14 778.0 15 769.0 16 760.0 17 780.0 18 800.0 19 885.5 20 971.0 21 971.5 22 972.0 23 1444.0 24 1916.0 25 2099.0 26 2777.5 27 3273.0 28 3497.5 29 3722.0 30 4864.5 31 6007.0 32 7172.0 33 8337.0 34 9739.5 35 11142.0 36 12415.0 37 13688.0 38 14842.0 39 15996.0 40 19523.0 41 23050.0 42 25201.0 43 27352.0 44 30217.0 45 33082.0 46 38286.0 47 43490.0 48 49047.0 49 54604.0 50 52781.0 51 50958.0 52 42676.0 53 34394.0 54 29802.0 55 25210.0 56 23070.0 57 20930.0 58 19232.5 59 17535.0 60 16883.0 61 16231.0 62 14364.5 63 12498.0 64 10345.5 65 8193.0 66 6899.5 67 5606.0 68 4772.5 69 3939.0 70 3078.0 71 2217.0 72 1999.0 73 1781.0 74 1351.5 75 748.5 76 575.0 77 425.5 78 276.0 79 193.0 80 110.0 81 94.0 82 78.0 83 44.0 84 10.0 85 7.0 86 4.0 87 4.0 88 4.0 89 3.5 90 3.0 91 1.5 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 457891.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.487028450709886 #Duplication Level Percentage of deduplicated Percentage of total 1 70.01158950609607 21.344453211517724 2 12.655580061224688 7.716620587735876 3 4.952470966081189 4.529583697326957 4 2.4244744030049628 2.9566008040972065 5 1.3712637914333474 2.0902879111428385 6 0.9264761737354115 1.6947303280545791 7 0.6209581067520495 1.3251817227074074 8 0.4643549125112747 1.1325441143166506 9 0.37427902984705586 1.0269589888306156 >10 5.781143639552643 44.45291302576331 >50 0.3547979982970998 6.414785597813704 >100 0.05613436889893263 2.845701310108552 >500 0.0035983569807008092 0.6542699542593449 >1k 0.0028786855845606475 1.8153687463252244 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 2445 0.5339698749265656 TruSeq Adapter, Index 22 (95% over 23bp) CTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGCT 2030 0.4433369513705227 TruSeq Adapter, Index 20 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 1957 0.4273942925281344 TruSeq Adapter, Index 22 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC 1842 0.40227914503670087 TruSeq Adapter, Index 22 (95% over 23bp) TCCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG 757 0.16532318826969736 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 672 0.14675981838472474 No Hit GCCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG 527 0.11509289328683027 TruSeq Adapter, Index 22 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG 519 0.11334575259177401 No Hit TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAA 507 0.11072504154918965 No Hit TGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTG 483 0.1054836194640209 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.45949800279979297 0.0 2 0.0 0.0 0.0 1.930153682863389 0.0 3 2.1839258688203088E-4 0.0 0.0 2.7454132096940103 0.0 4 2.1839258688203088E-4 0.0 0.0 3.6041328613141554 0.0 5 2.1839258688203088E-4 0.0 0.0 4.961442788785978 0.0 6 2.1839258688203088E-4 0.0 0.0 5.813829055386544 0.0 7 2.1839258688203088E-4 0.0 0.0 6.6144562788960695 0.0 8 2.1839258688203088E-4 0.0 0.0 7.908432356172102 0.0 9 4.3678517376406176E-4 0.0 0.0 8.515345355117265 0.0 10 4.3678517376406176E-4 0.0 0.0 9.683090517175485 0.0 11 4.3678517376406176E-4 0.0 0.0 11.727463522978177 0.0 12 4.3678517376406176E-4 0.0 0.0 13.721606233798 0.0 13 4.3678517376406176E-4 0.0 0.0 14.316070855290889 0.0 14 4.3678517376406176E-4 0.0 0.0 14.540141649431852 0.0 15 4.3678517376406176E-4 0.0 0.0 14.855282152302623 0.0 16 4.3678517376406176E-4 0.0 0.0 15.634943687471473 0.0 17 4.3678517376406176E-4 0.0 0.0 16.75507926558941 0.0 18 4.3678517376406176E-4 0.0 0.0 18.03922767645575 0.0 19 4.3678517376406176E-4 0.0 0.0 18.881567884059745 0.0 20 4.3678517376406176E-4 0.0 0.0 19.8385641997768 0.0 21 4.3678517376406176E-4 0.0 0.0 21.047148775581963 0.0 22 4.3678517376406176E-4 0.0 0.0 22.236951588915264 0.0 23 6.551777606460926E-4 0.0 0.0 23.33415594541059 0.0 24 6.551777606460926E-4 0.0 0.0 24.171909908690058 0.0 25 8.735703475281235E-4 0.0 0.0 24.933881644321467 0.0 26 8.735703475281235E-4 0.0 0.0 25.6043468860493 0.0 27 8.735703475281235E-4 0.0 0.0 26.24751305441688 0.0 28 8.735703475281235E-4 0.0 0.0 26.909679377843197 0.0 29 8.735703475281235E-4 0.0 0.0 27.63255884042272 0.0 30 8.735703475281235E-4 0.0 0.0 28.409381271962104 0.0 31 8.735703475281235E-4 0.0 0.0 29.169605866898454 0.0 32 8.735703475281235E-4 0.0 0.0 29.86365750800955 0.0 33 8.735703475281235E-4 0.0 0.0 30.494812084098616 0.0 34 8.735703475281235E-4 0.0 0.0 31.16418536289204 0.0 35 8.735703475281235E-4 0.0 0.0 31.840983989639454 0.0 36 8.735703475281235E-4 0.0 0.0 32.52913903090474 0.0 37 0.0010919629344101544 0.0 0.0 33.226029775645294 0.0 38 0.0010919629344101544 0.0 0.0 33.91178249845487 0.0 39 0.0010919629344101544 0.0 0.0 34.64885747918173 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 40 6.7993824E-9 45.000004 1 ACGCCGA 20 7.0288347E-4 45.000004 42 ATTAGCC 20 7.0288347E-4 45.000004 22 CGTTGAA 20 7.0288347E-4 45.000004 18 CCGGACC 20 7.0288347E-4 45.000004 14 AAACGCA 30 2.1626292E-6 45.000004 15 TACGCTA 20 7.0288347E-4 45.000004 14 TCTACGG 30 2.1626292E-6 45.000004 2 TCTACGC 20 7.0288347E-4 45.000004 12 CGTAGGC 20 7.0288347E-4 45.000004 33 AGTTCGT 20 7.0288347E-4 45.000004 29 ATGGTAC 20 7.0288347E-4 45.000004 17 CTCGAGC 20 7.0288347E-4 45.000004 14 TGGATCG 20 7.0288347E-4 45.000004 34 CCCGATA 20 7.0288347E-4 45.000004 24 GCGAGGT 20 7.0288347E-4 45.000004 21 CGGAATG 35 1.2097917E-7 45.0 6 ACACGCG 25 3.8871167E-5 45.0 11 GCGACCG 25 3.8871167E-5 45.0 31 GACCGTT 25 3.8871167E-5 45.0 1 >>END_MODULE