SRR2933878.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933878.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	524754
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	3032	0.5777945475403713	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	2653	0.5055702290978249	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	2638	0.5027117468375658	No Hit
TCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	2350	0.4478288874405912	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC	1258	0.23973137889372925	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC	1162	0.22143709242807108	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG	1091	0.20790694306284468	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	963	0.18351456110863376	No Hit
TCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	926	0.17646363819999467	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	765	0.14578259527321374	No Hit
GCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	763	0.1454014643051792	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	740	0.1410184581727819	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	692	0.1318713149399528	No Hit
TGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	577	0.10995628427796643	No Hit
GTGGAAGGAAAAGAGCAGATCTTGGATGTGTTTCCACTTTGGGCCTCAACC	559	0.10652610556565552	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTC	20	7.0297765E-4	45.000004	44
GGTACGT	20	7.0297765E-4	45.000004	7
CTTCACG	20	7.0297765E-4	45.000004	1
ATTACGC	20	7.0297765E-4	45.000004	40
CATTACG	20	7.0297765E-4	45.000004	39
TGCATCA	40	6.8030204E-9	45.000004	35
GTTACGG	30	2.1632386E-6	45.000004	2
CCGTAGT	30	2.1632386E-6	45.000004	29
CTTATAG	20	7.0297765E-4	45.000004	21
CTAGTGA	20	7.0297765E-4	45.000004	35
TTAAGCG	20	7.0297765E-4	45.000004	24
CGTAGAT	20	7.0297765E-4	45.000004	22
TACGAAA	30	2.1632386E-6	45.000004	20
CCATATA	20	7.0297765E-4	45.000004	15
CATACGA	30	2.1632386E-6	45.000004	18
TCCGTAG	30	2.1632386E-6	45.000004	28
TAGGATC	20	7.0297765E-4	45.000004	19
CACGTGG	20	7.0297765E-4	45.000004	13
GTACGTC	20	7.0297765E-4	45.000004	8
ATCGACT	20	7.0297765E-4	45.000004	21