##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933877.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1537881 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4677871694884 33.0 31.0 34.0 31.0 34.0 2 32.69477677401567 34.0 31.0 34.0 31.0 34.0 3 32.738947942005915 34.0 31.0 34.0 31.0 34.0 4 36.12464813597411 37.0 35.0 37.0 35.0 37.0 5 36.145424125793866 37.0 35.0 37.0 35.0 37.0 6 35.72049462864812 37.0 35.0 37.0 35.0 37.0 7 36.0479809556136 37.0 35.0 37.0 35.0 37.0 8 36.02833899371928 37.0 36.0 37.0 35.0 37.0 9 37.90636336621624 39.0 38.0 39.0 35.0 39.0 10 37.64791228970252 39.0 37.0 39.0 35.0 39.0 11 37.58258018663343 39.0 37.0 39.0 35.0 39.0 12 37.39287240040029 39.0 37.0 39.0 35.0 39.0 13 37.326603943998265 39.0 37.0 39.0 35.0 39.0 14 38.48239818295434 40.0 38.0 41.0 34.0 41.0 15 38.56031838614301 40.0 38.0 41.0 34.0 41.0 16 38.66435049265841 40.0 38.0 41.0 35.0 41.0 17 38.610363220561275 40.0 38.0 41.0 35.0 41.0 18 38.53974397238798 40.0 38.0 41.0 35.0 41.0 19 38.51816818076301 40.0 37.0 41.0 34.0 41.0 20 38.3941156695479 40.0 37.0 41.0 34.0 41.0 21 38.35047900325188 40.0 37.0 41.0 34.0 41.0 22 38.361247066580574 40.0 37.0 41.0 34.0 41.0 23 38.298623235477905 40.0 37.0 41.0 34.0 41.0 24 38.270266685133635 40.0 37.0 41.0 34.0 41.0 25 38.200719691575614 40.0 37.0 41.0 34.0 41.0 26 38.1360293806868 40.0 37.0 41.0 34.0 41.0 27 38.115250789885565 40.0 37.0 41.0 34.0 41.0 28 38.03059534515349 40.0 36.0 41.0 34.0 41.0 29 38.00624950825194 40.0 36.0 41.0 34.0 41.0 30 37.926610056304746 40.0 36.0 41.0 34.0 41.0 31 37.84136744000349 40.0 36.0 41.0 34.0 41.0 32 37.67719283871769 40.0 36.0 41.0 33.0 41.0 33 37.57247992529981 40.0 36.0 41.0 33.0 41.0 34 37.45711859370133 40.0 36.0 41.0 33.0 41.0 35 37.35030538773806 40.0 36.0 41.0 33.0 41.0 36 37.26543341129776 40.0 35.0 41.0 33.0 41.0 37 37.18337959829142 40.0 35.0 41.0 32.0 41.0 38 37.15813642277914 40.0 35.0 41.0 32.0 41.0 39 37.09365549089949 40.0 35.0 41.0 32.0 41.0 40 36.981173445799776 39.0 35.0 41.0 32.0 41.0 41 36.82864408884693 39.0 35.0 41.0 31.0 41.0 42 36.785329294009095 39.0 35.0 41.0 31.0 41.0 43 36.72764472673764 39.0 35.0 41.0 31.0 41.0 44 36.65672311446725 39.0 35.0 41.0 31.0 41.0 45 36.666290174597385 39.0 35.0 41.0 31.0 41.0 46 36.59189170033312 39.0 35.0 41.0 31.0 41.0 47 36.48670735902193 39.0 35.0 41.0 31.0 41.0 48 36.43456873451197 39.0 35.0 41.0 31.0 41.0 49 36.43691742078873 39.0 35.0 41.0 31.0 41.0 50 36.359856191733954 39.0 35.0 41.0 31.0 41.0 51 35.47291695521305 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 19.0 10 32.0 11 24.0 12 20.0 13 12.0 14 26.0 15 31.0 16 71.0 17 128.0 18 224.0 19 454.0 20 893.0 21 1576.0 22 2508.0 23 3671.0 24 5504.0 25 8060.0 26 11259.0 27 13028.0 28 14141.0 29 15360.0 30 18222.0 31 22971.0 32 31152.0 33 46118.0 34 90952.0 35 107634.0 36 106345.0 37 169003.0 38 323012.0 39 545119.0 40 306.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.535850953357247 4.421408418466708 52.90233769713001 17.14040293104603 2 20.471870060167205 6.846303452607841 51.113447659474296 21.56837882775065 3 20.32634514634097 7.064915946032235 50.70580883696463 21.902930070662162 4 18.669910090572678 4.783334991459027 52.37479362837567 24.171961289592627 5 20.460880913412677 5.783997591491149 49.25329072925668 24.50183076583949 6 20.99778851549632 8.098741059938968 52.286945478876454 18.616524945688255 7 81.14821627941303 2.3501818411177458 12.130587477184514 4.371014402284702 8 82.39064010804476 4.6235046794908055 8.842231616100335 4.143623596364088 9 76.88592290300745 5.0513661330102915 10.794463290722755 7.268247673259505 10 39.59669181165513 28.47782110579427 17.845724083983093 14.07976299856751 11 29.591626400222125 22.759303223071225 27.650318847817225 19.99875152888943 12 25.8699470245097 20.597367416594654 31.75343215762468 21.77925340127097 13 25.010907866083265 20.704137706363497 33.89755124096078 20.387403186592458 14 21.080889873793875 23.596819259747665 33.33983578703424 21.98245507942422 15 18.750150369241833 23.148345027996314 36.277579344565666 21.82392525819618 16 23.455260842678985 23.87284841935104 30.214561464768728 22.457329273201243 17 23.746635793016495 24.56347402692406 29.604046086790852 22.085844093268594 18 23.5546183352288 23.325211768660903 30.930936788997325 22.18923310711297 19 23.59499857271141 24.780330857849208 29.58739980531654 22.03727076412284 20 24.41515305800644 26.931212493034245 29.738646878399567 18.914987570559752 21 25.18816475396991 25.901548949496096 30.164817693956813 18.745468602577184 22 23.793388435125994 22.001247170619834 31.7305435205975 22.474820873656675 23 22.61416845646705 24.264231107608456 30.857394037640102 22.264206398284394 24 22.754816530017603 24.224371066421917 29.93469585748182 23.086116546078664 25 22.472805113009393 26.500489959886366 28.09346106753383 22.93324385957041 26 21.13479521497437 25.618627188969757 28.771471914927098 24.475105681128774 27 21.39476331393651 25.298251295126217 30.300263804546645 23.006721586390626 28 18.762700104884576 25.644571979236364 30.582795417850928 25.00993249802813 29 20.48032324997838 24.838137671250244 30.375042022107042 24.306497056664334 30 21.615131469860152 25.635793666740142 29.999200198194785 22.749874665204914 31 22.128630238620545 25.357943820100516 27.91041699585339 24.603008945425557 32 23.220327190465323 26.669813854257907 26.522013081636352 23.58784587364042 33 22.612282744893786 24.74294174906901 26.612722310763964 26.032053195273235 34 20.44560014721555 24.70795854815815 29.15076003930083 25.695681265325472 35 19.85205617339703 27.133828950354417 28.258168219777737 24.75594665647082 36 20.934909788208582 27.12277477906288 26.944802621269137 24.997512811459405 37 20.135758228367475 28.33073560307982 27.11841813508327 24.415088033469427 38 20.6523781749043 26.89115737823668 26.11983632023544 26.33662812662358 39 20.75063025032496 25.717789607908543 26.52454903857971 27.007031103186783 40 22.362523498242062 24.15011304515759 27.826925490333775 25.66043796626657 41 19.692876106798902 25.706280264857945 27.00547051429857 27.595373114044584 42 19.890615723843393 25.339866998812 29.03768236944211 25.731834907902496 43 20.936080229874744 24.07474960676411 28.67523560015372 26.313934563207425 44 21.479815408344336 23.74962692171891 28.291135660041316 26.47942200989543 45 20.668829382767587 23.315588137183564 27.670866601512078 28.344715878536764 46 21.554138454145672 24.43121411864767 28.3068065734605 25.707840853746163 47 18.457214830016106 24.848346523560664 31.266398375426967 25.42804027099626 48 19.392202647669098 25.535655879746223 29.309680007750927 25.762461464833752 49 20.879573907213885 23.62978670001125 30.26196435224832 25.228675040526543 50 20.319387520881005 23.61079953520461 28.760872915394625 27.308940028519764 51 19.64222199246886 23.444401744998476 27.617611505701678 29.295764756830987 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 214.0 1 776.0 2 1338.0 3 7849.5 4 14361.0 5 9238.0 6 4115.0 7 3982.5 8 3850.0 9 4018.0 10 4186.0 11 4145.0 12 4104.0 13 3983.5 14 3863.0 15 3681.5 16 3500.0 17 3343.0 18 3186.0 19 3489.0 20 3792.0 21 4380.5 22 4969.0 23 5948.5 24 6928.0 25 7948.5 26 11195.5 27 13422.0 28 16199.0 29 18976.0 30 22291.5 31 25607.0 32 29198.0 33 32789.0 34 36591.0 35 40393.0 36 44705.5 37 49018.0 38 53459.5 39 57901.0 40 63093.0 41 68285.0 42 72770.0 43 77255.0 44 85816.0 45 94377.0 46 120562.5 47 146748.0 48 147950.0 49 149152.0 50 147235.0 51 145318.0 52 127639.5 53 109961.0 54 99327.5 55 88694.0 56 83653.5 57 78613.0 58 73555.5 59 68498.0 60 62848.0 61 57198.0 62 51163.5 63 45129.0 64 39654.5 65 34180.0 66 29345.5 67 24511.0 68 20696.5 69 16882.0 70 13762.0 71 10642.0 72 8812.0 73 6982.0 74 5861.0 75 3742.5 76 2745.0 77 2065.0 78 1385.0 79 1014.5 80 644.0 81 414.0 82 184.0 83 180.0 84 176.0 85 114.0 86 52.0 87 46.5 88 41.0 89 23.5 90 6.0 91 4.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1537881.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.287255257815087 #Duplication Level Percentage of deduplicated Percentage of total 1 72.5586669578988 21.250442003627747 2 10.526945433757296 6.166106760070817 3 3.7039675559961425 3.254371298373736 4 1.858847747098263 2.1776219381872535 5 1.1535922513711339 1.689277536467199 6 0.8290193715026977 1.4567821168123762 7 0.6265482993744533 1.2844915982590692 8 0.5503413216461092 1.289438941277833 9 0.4777171606649382 1.2591921982889434 >10 7.487315339530741 49.941251431235095 >50 0.17446003120319978 3.180016049723867 >100 0.04628708296635866 2.5329722020389194 >500 0.0017975562828167308 0.3926037394015277 >1k 0.0035951125656334616 2.095422103590923 >5k 8.987781414083654E-4 2.030010082644708 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9085 0.5907479187271316 No Hit GAATCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTC 7582 0.49301603960254403 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGC 7570 0.49223574515843554 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCG 6611 0.4298772141667659 No Hit GCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 4021 0.2614636633133513 TruSeq Adapter, Index 16 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 3866 0.25138486007695005 TruSeq Adapter, Index 16 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGCT 3666 0.23837995267514198 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTGC 2697 0.17537117631338187 TruSeq Adapter, Index 16 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCTG 2657 0.17277019483302025 No Hit GAACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCTTCT 1757 0.11424811152488393 No Hit GAATGACTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTCT 1635 0.106315118009781 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTACACCACTCGTATGCCGTC 1633 0.10618506893576292 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9507361102712108E-4 0.0 0.0 0.24787353507846185 0.0 2 1.9507361102712108E-4 0.0 0.0 0.9819355333735185 0.0 3 1.9507361102712108E-4 0.0 0.0 1.5122106326822427 0.0 4 1.9507361102712108E-4 0.0 0.0 2.1328048138965237 0.0 5 1.9507361102712108E-4 0.0 0.0 3.5577525179126344 0.0 6 1.9507361102712108E-4 0.0 0.0 4.490139354085264 0.0 7 1.9507361102712108E-4 0.0 0.0 5.312049501879534 0.0 8 1.9507361102712108E-4 0.0 0.0 6.373379994941091 0.0 9 1.9507361102712108E-4 0.0 0.0 6.942734840992248 0.0 10 1.9507361102712108E-4 0.0 0.0 8.233601949695718 0.0 11 1.9507361102712108E-4 0.0 0.0 9.631889593538121 0.0 12 1.9507361102712108E-4 0.0 0.0 11.356925535850953 0.0 13 1.9507361102712108E-4 0.0 0.0 11.835701201848517 0.0 14 1.9507361102712108E-4 0.0 0.0 12.055939308698138 0.0 15 1.9507361102712108E-4 0.0 0.0 12.392701385867957 0.0 16 1.9507361102712108E-4 0.0 0.0 12.914003099069435 0.0 17 1.9507361102712108E-4 0.0 0.0 13.575757812210437 0.0 18 1.9507361102712108E-4 0.0 0.0 14.251947972567448 0.0 19 1.9507361102712108E-4 0.0 0.0 14.89289483386556 0.0 20 1.9507361102712108E-4 0.0 0.0 15.495477218328336 0.0 21 2.6009814803616146E-4 0.0 0.0 16.2655628101264 0.0017556624992440897 22 2.6009814803616146E-4 0.0 0.0 17.105484754672176 0.0017556624992440897 23 2.6009814803616146E-4 0.0 0.0 17.862175291846377 0.0017556624992440897 24 2.6009814803616146E-4 0.0 0.0 18.46911432028876 0.0017556624992440897 25 2.6009814803616146E-4 0.0 0.0 19.010118468203977 0.0017556624992440897 26 2.6009814803616146E-4 0.0 0.0 19.493250778181146 0.0017556624992440897 27 2.6009814803616146E-4 0.0 0.0 20.018649037214193 0.0017556624992440897 28 2.6009814803616146E-4 0.0 0.0 20.52493008236658 0.0017556624992440897 29 2.6009814803616146E-4 0.0 0.0 21.0853765668475 0.0017556624992440897 30 2.6009814803616146E-4 0.0 0.0 21.749797286005876 0.0017556624992440897 31 2.6009814803616146E-4 0.0 0.0 22.277796526519282 0.0017556624992440897 32 2.6009814803616146E-4 0.0 0.0 22.802804638330272 0.0017556624992440897 33 2.6009814803616146E-4 0.0 0.0 23.326317185790057 0.0017556624992440897 34 2.6009814803616146E-4 0.0 0.0 23.86335483694772 0.0017556624992440897 35 2.6009814803616146E-4 0.0 0.0 24.439732332995856 0.0017556624992440897 36 2.6009814803616146E-4 0.0 0.0 24.97286851193298 0.0017556624992440897 37 2.6009814803616146E-4 0.0 0.0 25.521155407993206 0.0017556624992440897 38 3.251226850452018E-4 0.0 0.0 26.126923994769427 0.0017556624992440897 39 3.251226850452018E-4 0.0 0.0 27.047151242521366 0.0017556624992440897 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGTA 20 7.034031E-4 45.0 44 CGTTTTT 4155 0.0 42.400723 1 CGAATAT 100 0.0 40.5 14 TTTCGCG 475 0.0 39.789474 1 TACGGGA 345 0.0 39.130432 4 CCGATGA 470 0.0 38.776596 18 TACGAAT 105 0.0 38.57143 12 GACCGAT 540 0.0 38.333336 9 TTTGGGC 2990 0.0 37.85117 4 TACGGCT 1000 0.0 37.574997 7 TTGGGAC 3235 0.0 37.27975 5 TTTGGGA 8420 0.0 36.82304 4 AATCGTT 55 2.750312E-9 36.81818 22 TTGGGAT 4515 0.0 36.77741 5 TTACGGG 355 0.0 36.760563 3 GCCGATT 160 0.0 36.5625 9 GGGACCG 810 0.0 36.38889 7 TTGGGCA 1620 0.0 36.38889 5 TCTTGCG 405 0.0 36.11111 1 TCGCATA 25 0.0021073294 36.0 20 >>END_MODULE