SRR2933876.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933876.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1149996
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	3267	0.28408794465372056	No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT	3027	0.26321830684628467	No Hit
GCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	2960	0.2573921996250422	No Hit
TCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGC	2559	0.22252251312178478	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2021	0.17573974170344941	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1777	0.15452227659922294	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1700	0.14782660113600393	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGTA	25	3.8908078E-5	45.0	8
CCGTACT	20	7.0332875E-4	45.0	33
CGTAGTA	20	7.0332875E-4	45.0	43
CGCGTAA	25	3.8908078E-5	45.0	13
GCTAACG	20	7.0332875E-4	45.0	9
CGATAAG	20	7.0332875E-4	45.0	24
TACCGCG	25	3.8908078E-5	45.0	1
CGAATAT	95	0.0	42.631577	14
AACCCGC	55	6.184564E-11	40.909092	21
TTTCTCG	340	0.0	39.705883	1
TATTGCG	40	3.4582263E-7	39.375	1
CGATAAC	40	3.4582263E-7	39.375	16
AGACACG	115	0.0	39.130436	24
CGGGCAA	190	0.0	39.078945	6
TACGAAT	110	0.0	38.863636	12
CGTTTTT	1170	0.0	38.653847	1
TTACGGG	175	0.0	38.57143	3
TGGGCGA	1225	0.0	38.571426	6
CCGTTGT	35	6.2482923E-6	38.571426	39
TTTCGCG	270	0.0	38.333332	1