SRR2933875.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933875.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1573952
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13819	0.8779810311877363	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	6042	0.3838744764770463	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	5241	0.3329834709063555	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTG	3775	0.2398421298743545	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	3239	0.20578772414914814	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTC	3144	0.19975196194038955	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTT	2979	0.18926879599886148	No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	2871	0.18240708738258854	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCT	2216	0.14079209531167405	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	1767	0.11226517708290977	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	7835	0.0	43.707726	1
CTATGCG	50	1.0822987E-9	40.5	1
TTTCGCG	380	0.0	39.67105	1
TTATCCG	40	3.4593177E-7	39.375	1
CGCCGTA	35	6.249762E-6	38.571426	36
TACGGGA	310	0.0	38.46774	4
TTTGGGA	9385	0.0	38.023445	4
TTTGGGC	3240	0.0	37.916668	4
TATGCGG	215	0.0	37.67442	2
TCGTTTG	505	0.0	37.425743	1
TTTTGCG	1355	0.0	37.19557	1
GTTTTTT	9655	0.0	37.05334	2
TTGGGAC	3555	0.0	37.025314	5
TTGGGAT	5555	0.0	36.939693	5
CGGGATC	675	0.0	36.666668	6
ACACGCG	350	0.0	36.642857	36
TGGGACG	400	0.0	36.5625	6
TTGGGAA	4075	0.0	36.552147	5
TGGGCGA	1825	0.0	36.493153	6
GTTGGGA	2980	0.0	36.24161	4