##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933875.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1573952 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.49161283190339 33.0 31.0 34.0 31.0 34.0 2 32.73904731529297 34.0 31.0 34.0 31.0 34.0 3 32.7391044961981 34.0 31.0 34.0 31.0 34.0 4 36.13679133798235 37.0 35.0 37.0 35.0 37.0 5 36.180763454031634 37.0 35.0 37.0 35.0 37.0 6 35.83568495100232 37.0 35.0 37.0 35.0 37.0 7 36.134544128410525 37.0 36.0 37.0 35.0 37.0 8 36.15322894217867 37.0 37.0 37.0 35.0 37.0 9 38.019488523156994 39.0 39.0 39.0 37.0 39.0 10 37.73186984101167 39.0 38.0 39.0 35.0 39.0 11 37.661382303907615 39.0 37.0 39.0 35.0 39.0 12 37.51910922315293 39.0 37.0 39.0 35.0 39.0 13 37.47690717378929 39.0 37.0 39.0 35.0 39.0 14 38.632722598910256 40.0 38.0 41.0 35.0 41.0 15 38.713381983694546 40.0 38.0 41.0 35.0 41.0 16 38.819493860041476 40.0 38.0 41.0 35.0 41.0 17 38.8059311846867 40.0 38.0 41.0 35.0 41.0 18 38.694471623022814 40.0 38.0 41.0 35.0 41.0 19 38.62980700809173 40.0 37.0 41.0 35.0 41.0 20 38.49863528239743 40.0 37.0 41.0 35.0 41.0 21 38.42438142967511 40.0 37.0 41.0 34.0 41.0 22 38.44832688671573 40.0 37.0 41.0 35.0 41.0 23 38.406317981742774 40.0 37.0 41.0 35.0 41.0 24 38.37808205078681 40.0 37.0 41.0 34.0 41.0 25 38.29930391778148 40.0 37.0 41.0 34.0 41.0 26 38.24418088988737 40.0 37.0 41.0 34.0 41.0 27 38.241243697393564 40.0 37.0 41.0 34.0 41.0 28 38.16738502826007 40.0 37.0 41.0 34.0 41.0 29 38.13711091570772 40.0 37.0 41.0 34.0 41.0 30 38.03940018501199 40.0 36.0 41.0 34.0 41.0 31 37.910468044768834 40.0 36.0 41.0 34.0 41.0 32 37.722337784125564 40.0 36.0 41.0 33.0 41.0 33 37.52617042959379 40.0 36.0 41.0 33.0 41.0 34 37.34111459561664 40.0 36.0 41.0 33.0 41.0 35 37.21505293681129 40.0 36.0 41.0 32.0 41.0 36 37.0779795063636 40.0 36.0 41.0 32.0 41.0 37 36.98823216972309 40.0 35.0 41.0 31.0 41.0 38 36.93237595555646 40.0 35.0 41.0 31.0 41.0 39 36.867057572276664 40.0 35.0 41.0 31.0 41.0 40 36.78286631358517 40.0 35.0 41.0 31.0 41.0 41 36.62520203919814 40.0 35.0 41.0 31.0 41.0 42 36.572799551701706 39.0 35.0 41.0 30.0 41.0 43 36.46482675456431 39.0 35.0 41.0 30.0 41.0 44 36.38722083011426 39.0 35.0 41.0 30.0 41.0 45 36.413660645305576 39.0 35.0 41.0 30.0 41.0 46 36.37026986845851 39.0 35.0 41.0 30.0 41.0 47 36.27455030394828 39.0 35.0 41.0 30.0 41.0 48 36.18667024153214 39.0 35.0 41.0 30.0 41.0 49 36.16457808116131 39.0 35.0 41.0 30.0 41.0 50 36.09434658744358 39.0 35.0 41.0 30.0 41.0 51 35.1552639470581 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 5.0 9 18.0 10 40.0 11 28.0 12 33.0 13 23.0 14 26.0 15 44.0 16 74.0 17 149.0 18 244.0 19 456.0 20 818.0 21 1396.0 22 2310.0 23 3617.0 24 6113.0 25 11034.0 26 16481.0 27 18661.0 28 18052.0 29 18228.0 30 19310.0 31 22838.0 32 29897.0 33 43588.0 34 83696.0 35 94984.0 36 100995.0 37 160874.0 38 323524.0 39 596018.0 40 375.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.418155064449234 4.199492741837108 54.14186709632822 19.240485097385434 2 23.055849225389338 4.215948135648355 52.022615683324524 20.705586955637784 3 19.114877709104217 4.532603281421543 54.60096623022811 21.75155277924613 4 18.07977625747164 4.562909161143415 53.71682236815354 23.640492213231408 5 18.003217378928962 5.517067864839588 52.35572622290896 24.12398853332249 6 20.124120684747695 6.335580754686293 54.97963089090392 18.5606676696621 7 80.11921583377384 2.149493758386533 13.020092099377873 4.711198308461757 8 82.13541454885537 2.7299434798519906 10.863990769731224 4.27065120156142 9 76.45690592851625 5.024549668604887 13.027462082706462 5.491082320172406 10 36.026448074655384 30.191136705566624 20.113129244093848 13.669285975684137 11 26.27488004716789 23.344612796324157 31.477961208473953 18.902545948033993 12 23.940946102549507 21.471684015776844 33.998940247224816 20.588429634448826 13 23.457449782458422 20.890344813564834 35.83698867563941 19.815216728337333 14 19.432867075997233 23.289782661733014 36.10211747245151 21.175232789818242 15 17.53560464359777 24.51624954255276 37.50832299841419 20.439822815435285 16 21.979196316024886 24.218972370186638 33.323506688895215 20.47832462489326 17 22.37628593502216 24.596048672386452 31.659288212092875 21.368377180498516 18 22.234667893302973 23.884400540804293 33.21791261741146 20.663018948481277 19 22.20715752449884 25.929253242792665 31.631269568576425 20.23231966413207 20 22.648530577806696 27.475806123693737 31.172615175049813 18.70304812344976 21 22.767339791810677 25.88801945675599 32.99389053795795 18.35075021347538 22 22.04870288293417 23.00298865530842 33.40298814703371 21.5453203147237 23 20.347761558166958 24.417199507990077 33.03982586508356 22.195213068759404 24 20.653997072337656 25.203373419265645 32.10301203594519 22.03961747245151 25 21.378923880779084 25.965340747367136 30.277098666287156 22.378636705566624 26 20.366885394217867 25.85263082991095 31.059015776847072 22.72146799902411 27 20.34738035213272 24.83214227625747 32.89585705281991 21.9246203187899 28 19.107507725775626 24.463007766437606 33.160159903224496 23.269324604562275 29 20.085873012645873 23.93281370715244 33.08823903143171 22.893074248769977 30 22.535820660350506 23.17656446956451 32.693563717317936 21.594051152767047 31 22.93735768308055 24.384606392062782 31.873335400317167 20.804700524539506 32 23.48991582970764 24.508244215833773 31.24847517586305 20.753364778595536 33 23.624799231488637 23.79164040580653 30.51147684300411 22.072083519700726 34 21.196707396413615 23.917819603139105 32.58860498922458 22.296868011222706 35 22.017126316431504 24.847835258000245 31.19034125564185 21.944697169926403 36 23.783253873053308 25.20845616638881 29.78496167608669 21.22332828447119 37 22.580358232017243 26.6005570690847 30.54603952344163 20.27304517545643 38 22.053722095718296 25.439530557475702 31.02826515675192 21.47848219005408 39 21.476893831578092 24.866577888016916 29.95104043833611 23.70548784206888 40 24.33860753059814 23.581405277924613 30.044626519741392 22.03536067173586 41 22.968743646566097 24.7899554751352 28.888174480543245 23.353126397755457 42 21.684651120237465 25.489277944943684 30.345525149432767 22.480545785386084 43 21.413105355182367 24.697513011832637 31.595309132680033 22.294072500304964 44 21.722644654983124 23.776455698776076 30.75563930793315 23.74526033830765 45 21.26691284105233 22.629216138738663 30.20536839751149 25.898502622697517 46 22.052070202903266 23.12986673037043 30.837217399259952 23.98084566746635 47 20.368600821371935 24.158297076403855 32.794837453747 22.67826464847721 48 20.485885211238973 24.537470011791974 31.963808299109502 23.01283647785955 49 21.98453320050421 22.98418249095271 32.363185154312205 22.668099154230877 50 21.233430244378482 22.892311836701502 31.170327938844387 24.703929980075632 51 20.447764607815234 22.672800695319808 30.160894360183793 26.71854033668117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 261.0 1 872.0 2 1483.0 3 11894.0 4 22305.0 5 14813.5 6 7322.0 7 7298.5 8 7275.0 9 7459.0 10 7643.0 11 7408.0 12 7173.0 13 7003.5 14 6834.0 15 6567.0 16 6300.0 17 6111.0 18 5922.0 19 5995.0 20 6068.0 21 6310.0 22 6552.0 23 7140.0 24 7728.0 25 9358.5 26 13327.0 27 15665.0 28 18504.5 29 21344.0 30 24808.0 31 28272.0 32 31337.0 33 34402.0 34 40158.0 35 45914.0 36 50621.0 37 55328.0 38 59829.0 39 64330.0 40 69482.0 41 74634.0 42 81630.0 43 88626.0 44 97724.0 45 106822.0 46 126064.5 47 145307.0 48 157417.5 49 169528.0 50 165224.0 51 160920.0 52 136421.0 53 111922.0 54 98888.5 55 85855.0 56 76984.0 57 68113.0 58 61491.5 59 54870.0 60 48645.5 61 42421.0 62 36391.5 63 30362.0 64 26600.5 65 22839.0 66 19408.5 67 15978.0 68 13162.0 69 10346.0 70 8268.5 71 6191.0 72 5087.0 73 3983.0 74 3533.0 75 2293.0 76 1503.0 77 1204.0 78 905.0 79 671.5 80 438.0 81 272.0 82 106.0 83 72.0 84 38.0 85 39.5 86 41.0 87 21.0 88 1.0 89 3.0 90 5.0 91 4.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1573952.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.15286819979122 #Duplication Level Percentage of deduplicated Percentage of total 1 72.91880978497962 24.174676900870757 2 10.646735909134415 7.059396647070354 3 3.8290371382377986 3.808306907283105 4 1.9428567351891153 2.576450930912057 5 1.2835970328618305 2.127746162605568 6 0.978069338497179 1.945548232167238 7 0.736079493456109 1.708220250178363 8 0.6417673997678514 1.7021144015541043 9 0.5207691757309846 1.5538492660970924 >10 6.308118535896096 43.66126592924832 >50 0.14305808662021688 3.05468371846216 >100 0.04587510058270516 2.774565754581017 >500 0.0025163517629150133 0.6184947651101329 >1k 0.0021292207224665495 1.6238214916317495 >5k 3.8713104044846357E-4 0.7240585634714286 >10k+ 1.9356552022423178E-4 0.8868000787566845 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13819 0.8779810311877363 No Hit CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC 6042 0.3838744764770463 No Hit CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT 5241 0.3329834709063555 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTG 3775 0.2398421298743545 No Hit GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC 3239 0.20578772414914814 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTC 3144 0.19975196194038955 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTT 2979 0.18926879599886148 No Hit TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC 2871 0.18240708738258854 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCT 2216 0.14079209531167405 No Hit CGTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT 1767 0.11226517708290977 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3456903387142683 0.0 2 0.0 0.0 0.0 1.1676976172081486 0.0 3 0.0 0.0 0.0 1.7889363843370065 0.0 4 0.0 0.0 0.0 2.408586792989875 0.0 5 0.0 0.0 0.0 3.588927743666897 0.0 6 0.0 0.0 0.0 4.805864473630708 0.0 7 0.0 0.0 0.0 5.780354165819542 0.0 8 0.0 0.0 0.0 7.0767723539218474 0.0 9 6.35343390395641E-5 0.0 0.0 7.9008127312649945 0.0 10 6.35343390395641E-5 0.0 0.0 9.071115256373766 0.0 11 6.35343390395641E-5 0.0 0.0 10.721356178587403 0.0 12 1.270686780791282E-4 0.0 0.0 12.158121721628106 0.0 13 1.270686780791282E-4 0.0 0.0 12.725292766234295 0.0 14 1.270686780791282E-4 0.0 0.0 13.005097995364535 0.0 15 1.270686780791282E-4 0.0 0.0 13.292527345179522 0.0 16 1.906030171186923E-4 0.0 0.0 13.812174704184118 0.0 17 1.906030171186923E-4 0.0 0.0 14.508955800431018 0.0 18 1.906030171186923E-4 0.0 0.0 15.263997885577197 0.0 19 1.906030171186923E-4 0.0 0.0 15.853088277152034 0.0 20 1.906030171186923E-4 0.0 0.0 16.460031817996992 0.0 21 1.906030171186923E-4 0.0 0.0 17.304784389867034 0.0 22 1.906030171186923E-4 0.0 0.0 18.215930346033424 0.0 23 1.906030171186923E-4 0.0 0.0 19.07351685438946 0.0 24 1.906030171186923E-4 0.0 0.0 19.722647196356686 0.0 25 1.906030171186923E-4 0.0 0.0 20.314215427154068 0.0 26 1.906030171186923E-4 0.0 0.0 20.83144848127516 0.0 27 1.906030171186923E-4 0.0 0.0 21.39976314398406 0.0 28 1.906030171186923E-4 0.0 0.0 21.956895763021997 0.0 29 1.906030171186923E-4 0.0 0.0 22.57737211808238 0.0 30 1.906030171186923E-4 0.0 0.0 23.289782661733014 0.0 31 1.906030171186923E-4 0.0 0.0 23.90403265156752 0.0 32 1.906030171186923E-4 0.0 0.0 24.48664254056032 0.0 33 1.906030171186923E-4 0.0 0.0 25.061120034156062 0.0 34 1.906030171186923E-4 0.0 0.0 25.64893973895011 0.0 35 1.906030171186923E-4 0.0 0.0 26.286062090838858 0.0 36 1.906030171186923E-4 0.0 0.0 26.86428811043793 0.0 37 1.906030171186923E-4 0.0 0.0 27.451281868824463 0.0 38 1.906030171186923E-4 0.0 0.0 28.10778219412028 0.0 39 1.906030171186923E-4 0.0 0.0 29.13487831903387 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 7835 0.0 43.707726 1 CTATGCG 50 1.0822987E-9 40.5 1 TTTCGCG 380 0.0 39.67105 1 TTATCCG 40 3.4593177E-7 39.375 1 CGCCGTA 35 6.249762E-6 38.571426 36 TACGGGA 310 0.0 38.46774 4 TTTGGGA 9385 0.0 38.023445 4 TTTGGGC 3240 0.0 37.916668 4 TATGCGG 215 0.0 37.67442 2 TCGTTTG 505 0.0 37.425743 1 TTTTGCG 1355 0.0 37.19557 1 GTTTTTT 9655 0.0 37.05334 2 TTGGGAC 3555 0.0 37.025314 5 TTGGGAT 5555 0.0 36.939693 5 CGGGATC 675 0.0 36.666668 6 ACACGCG 350 0.0 36.642857 36 TGGGACG 400 0.0 36.5625 6 TTGGGAA 4075 0.0 36.552147 5 TGGGCGA 1825 0.0 36.493153 6 GTTGGGA 2980 0.0 36.24161 4 >>END_MODULE