SRR2933873.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933873.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	126305
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGC	1274	1.008669490518982	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCG	958	0.7584814536241637	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTC	629	0.4980008709077234	No Hit
CCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC	331	0.2620640513043822	No Hit
GCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC	301	0.23831202248525396	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTACGCGTT	299	0.23672855389731207	No Hit
CTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGCT	270	0.21376825937215468	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	250	0.19793357349273585	No Hit
TCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGC	195	0.15438818732433396	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTA	168	0.13301136138711847	No Hit
GAACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCT	163	0.12905268991726376	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCT	160	0.12667748703535092	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTC	159	0.12588575274137997	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCACCG	35	1.2004784E-7	45.000004	8
TTGTGCG	25	3.8710496E-5	45.0	1
CGAAAAA	20	7.009435E-4	45.0	22
CCGATGA	50	2.1827873E-11	45.0	18
ATAGCAA	20	7.009435E-4	45.0	10
TGCGGGT	25	3.8710496E-5	45.0	4
TACGAAA	20	7.009435E-4	45.0	20
GCGATTC	40	6.73208E-9	45.0	9
CGATGAA	50	2.1827873E-11	45.0	19
ACATACG	20	7.009435E-4	45.0	17
AACACAC	20	7.009435E-4	45.0	27
TCTTATG	30	2.1501346E-6	44.999996	1
CGGGAAC	30	2.1501346E-6	44.999996	6
TGGGCCG	30	2.1501346E-6	44.999996	6
GGACCAA	30	2.1501346E-6	44.999996	8
TGCGGGA	210	0.0	42.857147	4
TGGGCGA	155	0.0	42.09677	6
GTGCGGG	75	0.0	42.0	3
CGGGAAT	65	0.0	41.53846	6
TACGGCT	180	0.0	41.25	7