SRR2933872.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933872.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1225795
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGCT	3365	0.2745157224495124	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	3290	0.2683972442374133	No Hit
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	3220	0.26268666457278744	No Hit
TCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	2661	0.2170836069652756	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2604	0.2124335635240803	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	2078	0.16952263632989203	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1813	0.1479040133138086	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	1701	0.13876708585040728	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1633	0.13321966560477078	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	1427	0.11641424544887197	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCGA	20	7.0334703E-4	45.0	14
CGTTCAT	100	0.0	40.500004	17
ACATACG	305	0.0	39.09836	17
CGTTTGG	785	0.0	38.694267	2
TTTGGGA	5670	0.0	38.650795	4
TTTGGGC	2360	0.0	38.61229	4
TCGATTG	35	6.248627E-6	38.57143	1
GCAATCG	35	6.248627E-6	38.57143	45
TCGTTTG	410	0.0	38.414635	1
CGGGTAT	130	0.0	38.076927	6
TTGGGAC	1900	0.0	37.776314	5
TTGGGCA	1085	0.0	37.53456	5
CCGAACG	30	1.1399662E-4	37.499996	37
TATGTCG	30	1.1399662E-4	37.499996	1
CATACGA	320	0.0	37.265625	18
TCTTGCG	315	0.0	37.142857	1
CGTTTTT	1380	0.0	36.847824	1
TACGAAA	325	0.0	36.692307	20
TTGGGAT	3185	0.0	36.66405	5
GTTGGGA	1960	0.0	36.6199	4