##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933870.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1414170 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43258448418507 33.0 31.0 34.0 31.0 34.0 2 32.6561841928481 34.0 31.0 34.0 31.0 34.0 3 32.71373809372282 34.0 31.0 34.0 31.0 34.0 4 36.08283869690349 37.0 35.0 37.0 35.0 37.0 5 36.11281882659086 37.0 35.0 37.0 35.0 37.0 6 35.70327329811833 37.0 35.0 37.0 35.0 37.0 7 36.043830656851725 37.0 35.0 37.0 35.0 37.0 8 36.05105821789459 37.0 36.0 37.0 35.0 37.0 9 37.900175367883634 39.0 38.0 39.0 35.0 39.0 10 37.57347490047165 39.0 37.0 39.0 35.0 39.0 11 37.51300126576013 39.0 37.0 39.0 35.0 39.0 12 37.387945579385786 39.0 37.0 39.0 35.0 39.0 13 37.33685412644873 39.0 37.0 39.0 35.0 39.0 14 38.593323999236304 40.0 38.0 41.0 35.0 41.0 15 38.64618115219528 40.0 38.0 41.0 35.0 41.0 16 38.708107936103865 40.0 38.0 41.0 35.0 41.0 17 38.66710437924719 40.0 38.0 41.0 35.0 41.0 18 38.61424510490252 40.0 38.0 41.0 35.0 41.0 19 38.64279612776399 40.0 38.0 41.0 35.0 41.0 20 38.58824469476796 40.0 38.0 41.0 35.0 41.0 21 38.510420246505014 40.0 38.0 41.0 34.0 41.0 22 38.5002220383688 40.0 38.0 41.0 34.0 41.0 23 38.442390943097365 40.0 38.0 41.0 34.0 41.0 24 38.40000919267132 40.0 37.0 41.0 34.0 41.0 25 38.319735958194556 40.0 37.0 41.0 34.0 41.0 26 38.23638317882574 40.0 37.0 41.0 34.0 41.0 27 38.22866416343155 40.0 37.0 41.0 34.0 41.0 28 38.14420897063295 40.0 37.0 41.0 34.0 41.0 29 38.14103254912776 40.0 37.0 41.0 34.0 41.0 30 38.0860950239363 40.0 37.0 41.0 34.0 41.0 31 38.01950331289732 40.0 37.0 41.0 34.0 41.0 32 37.94881520609262 40.0 37.0 41.0 34.0 41.0 33 37.88613603739296 40.0 37.0 41.0 34.0 41.0 34 37.834534744761946 40.0 37.0 41.0 33.0 41.0 35 37.80656922435068 40.0 37.0 41.0 33.0 41.0 36 37.71693360769922 40.0 36.0 41.0 33.0 41.0 37 37.6366327952085 40.0 36.0 41.0 33.0 41.0 38 37.58616927243542 40.0 36.0 41.0 33.0 41.0 39 37.55691960655367 40.0 36.0 41.0 33.0 41.0 40 37.427872179440946 40.0 36.0 41.0 33.0 41.0 41 37.3024798998706 40.0 35.0 41.0 33.0 41.0 42 37.288147111026255 39.0 35.0 41.0 33.0 41.0 43 37.19315640976686 39.0 35.0 41.0 32.0 41.0 44 37.090219704844536 39.0 35.0 41.0 32.0 41.0 45 37.09115099316207 39.0 35.0 41.0 32.0 41.0 46 36.98077529575652 39.0 35.0 41.0 32.0 41.0 47 36.89667720288226 39.0 35.0 41.0 32.0 41.0 48 36.84680696097357 39.0 35.0 41.0 32.0 41.0 49 36.82705261743638 39.0 35.0 41.0 32.0 41.0 50 36.743375973185685 39.0 35.0 41.0 32.0 41.0 51 35.78280616898959 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 25.0 10 44.0 11 29.0 12 17.0 13 23.0 14 17.0 15 26.0 16 52.0 17 100.0 18 179.0 19 334.0 20 587.0 21 1017.0 22 1604.0 23 2296.0 24 3463.0 25 5063.0 26 6892.0 27 8673.0 28 10511.0 29 12632.0 30 15945.0 31 20539.0 32 27301.0 33 39095.0 34 74431.0 35 101738.0 36 98638.0 37 159195.0 38 307985.0 39 515394.0 40 316.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.384904219436134 4.570171902953676 54.31793914451587 16.726984733094323 2 19.337703387852944 5.178585318596774 52.961312996315854 22.52239829723442 3 21.076037534384128 5.2144367367431075 51.160610110524196 22.548915618348573 4 19.82675350205421 4.650572420571784 50.97138250705361 24.551291570320398 5 19.32207584660967 6.094033956313597 48.85084537219712 25.733044824879613 6 21.91815694011328 7.407454549311611 51.86285948648324 18.811529024091868 7 82.95806020492586 2.597636776342307 9.671326643897126 4.772976374834709 8 84.04583607345651 3.6468034253307593 7.208609997383625 5.098750503829101 9 78.11486596378087 5.577900818147747 9.739918114512399 6.567315103558978 10 38.53886025018208 27.452852203059035 18.093298542608032 15.914989004150845 11 29.15314283289845 27.033737103742833 24.644137550648082 19.168982512710635 12 28.004553907946004 21.901327280312834 29.555286846701602 20.538831965039563 13 25.329203702525156 22.517943387287243 30.368555407058555 21.784297503129043 14 20.27196164534674 26.101812370507083 29.77103177128634 23.85519421285984 15 18.278495513269267 26.2288833732861 34.10721483272874 21.385406280715895 16 20.587199558751777 24.251681198158636 32.96562648055043 22.195492762539157 17 20.364171209967687 24.33582949716088 29.863736325901414 25.436262966970023 18 20.867929598280263 25.448637716823296 30.31707644766895 23.36635623722749 19 23.733850951441482 26.25129934873459 28.067841914338448 21.94700778548548 20 26.463367204791506 25.884299624514735 28.182113890126363 19.4702192805674 21 25.42155469285871 26.13342101727515 27.546900301943893 20.898123987922244 22 22.99051740596958 25.617217166253 26.737238097258466 24.655027330518962 23 22.975526280433044 26.343155349074017 27.06647715621177 23.614841214281167 24 23.306957437931793 23.504812009871515 28.86032089494191 24.327909657254786 25 22.3823868417517 25.607388079226684 26.980348897233007 25.029876181788612 26 20.745949921155166 26.779524385328497 27.529646365005622 24.944879328510716 27 21.472736658251836 27.103177128633753 27.55913362608456 23.864952587029848 28 19.09409759788427 27.41339442924118 29.541922116860064 23.95058585601448 29 20.291690532255668 25.060919125706242 29.611574280319903 25.03581606171818 30 21.032478414900613 25.203759095441143 28.93697363117588 24.82678885848236 31 20.545973963526308 28.548547911495785 26.56201163933615 24.343466485641756 32 22.724707779121324 27.40165609509465 26.22690341330957 23.646732712474456 33 22.207796799536123 26.48578318024 26.5307565568496 24.775663463374276 34 20.952219322995113 26.340609686247056 27.699710784417714 25.007460206340117 35 21.023851446431475 24.027167879392152 27.28639413931847 27.6625865348579 36 20.620222462645934 26.583791199077904 26.280008768394183 26.515977569881983 37 20.5378419850513 28.110269628121088 28.094429948308903 23.257458438518707 38 20.972655338467085 26.623036834326847 28.402384437514584 24.00192338969148 39 21.20134071575553 24.68953520439551 30.38142514690596 23.727698932943 40 22.46540373505307 24.101557804224385 30.61746466125006 22.81557379947248 41 20.078915547635713 25.737782586252006 28.009433095031007 26.17386877108127 42 21.4496842670966 25.160907104520675 26.460185126257805 26.92922350212492 43 21.456119137020302 24.656795151926573 27.678638353239005 26.208447357814123 44 20.951441481575767 24.50504536229732 27.99712905803404 26.546384098092872 45 21.2008457257614 22.96385865914282 27.600571359878938 28.234724255216843 46 20.612726899877668 24.91440208744352 28.315902614254295 26.156968398424517 47 19.506141411570038 25.186575871359175 29.899729169760352 25.407553547310435 48 19.733695383157613 23.294016985228083 30.112009164386176 26.860278467228127 49 19.91203320675732 23.346061647468126 31.455836285595083 25.286068860179466 50 19.908002573947968 23.03400581259679 30.197218156232985 26.86077345722226 51 18.997503836172456 23.13201383143469 28.086439395546503 29.78404293684635 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 218.0 1 770.0 2 1322.0 3 2777.0 4 4232.0 5 2995.5 6 1759.0 7 1868.0 8 1977.0 9 1961.0 10 1945.0 11 1993.0 12 2041.0 13 1899.5 14 1758.0 15 1850.5 16 1943.0 17 2129.0 18 2315.0 19 2642.5 20 2970.0 21 3570.5 22 4171.0 23 4487.5 24 4804.0 25 6987.5 26 10706.5 27 12242.0 28 15236.0 29 18230.0 30 19889.5 31 21549.0 32 26076.5 33 30604.0 34 35080.5 35 39557.0 36 42542.5 37 45528.0 38 49588.0 39 53648.0 40 59972.5 41 66297.0 42 72936.0 43 79575.0 44 88122.0 45 96669.0 46 112114.0 47 127559.0 48 138932.5 49 150306.0 50 146019.0 51 141732.0 52 122597.0 53 103462.0 54 90106.5 55 76751.0 56 71902.5 57 67054.0 58 66917.0 59 66780.0 60 62639.5 61 58499.0 62 51393.0 63 44287.0 64 35649.5 65 27012.0 66 21748.5 67 16485.0 68 13746.0 69 11007.0 70 8992.0 71 6977.0 72 6096.0 73 5215.0 74 4324.5 75 2549.5 76 1665.0 77 1216.0 78 767.0 79 514.0 80 261.0 81 262.5 82 264.0 83 152.0 84 40.0 85 27.0 86 14.0 87 12.5 88 11.0 89 22.5 90 34.0 91 30.5 92 27.0 93 14.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1414170.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.96554278614287 #Duplication Level Percentage of deduplicated Percentage of total 1 69.31574767208255 18.691367596050252 2 12.401188721485466 6.6880957013649756 3 5.095256455046142 4.121890678347522 4 2.5428701800714517 2.7427949856129423 5 1.4760998142607746 1.990191634903323 6 0.9514573529243564 1.5393938375683183 7 0.6815486091492152 1.286482972659453 8 0.49460079434252874 1.0669743105522969 9 0.4061628676756955 0.9857161967806307 >10 5.750864558390626 40.4031066282574 >50 0.7900885385506689 12.91298066356952 >100 0.08722154777215584 4.3288518363031265 >500 0.003446444124275302 0.5787005687787882 >1k 0.0026511108648271556 1.4623002018987168 >5k 7.953332594481466E-4 1.201152187352835 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 6029 0.426327810659256 Illumina PCR Primer Index 10 (95% over 23bp) CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGCT 5558 0.3930220553398814 Illumina PCR Primer Index 10 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 5215 0.3687675456274705 Illumina PCR Primer Index 10 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 4628 0.32725909897678496 Illumina PCR Primer Index 10 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGC 2310 0.16334669806317487 No Hit GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC 2171 0.15351761103686262 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2108 0.1490627010896851 No Hit TCCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTG 1982 0.14015288119533012 Illumina PCR Primer Index 10 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG 1958 0.13845577264402442 No Hit CGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTG 1510 0.1067764130196511 Illumina PCR Primer Index 10 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.828514252176188E-4 0.0 0.0 0.4134580708118543 0.0 2 2.828514252176188E-4 0.0 0.0 1.627597813558483 0.0 3 2.828514252176188E-4 0.0 0.0 2.342575503652319 0.0 4 2.828514252176188E-4 0.0 0.0 3.0763628135231267 0.0 5 2.828514252176188E-4 0.0 0.0 4.37726723095526 0.0 6 2.828514252176188E-4 0.0 0.0 5.167978390151113 0.0 7 2.828514252176188E-4 0.0 0.0 5.886916000197996 0.0 8 2.828514252176188E-4 0.0 0.0 6.985723074312141 0.0 9 2.828514252176188E-4 0.0 0.0 7.5061696967125595 0.0 10 2.828514252176188E-4 0.0 0.0 8.56523614558363 0.0 11 2.828514252176188E-4 0.0 0.0 10.298478966460893 0.0 12 2.828514252176188E-4 0.0 0.0 11.998698883444 0.0 13 2.828514252176188E-4 0.0 0.0 12.55160270688814 0.0 14 2.828514252176188E-4 0.0 0.0 12.756457851602 0.0 15 2.828514252176188E-4 0.0 0.0 13.093828889030314 0.0 16 2.828514252176188E-4 0.0 0.0 13.798482502103708 0.0 17 2.828514252176188E-4 0.0 0.0 14.741721292348162 0.0 18 2.828514252176188E-4 0.0 0.0 15.720387223601122 0.0 19 2.828514252176188E-4 0.0 0.0 16.447527524979318 0.0 20 2.828514252176188E-4 0.0 0.0 17.200902296046443 0.0 21 2.828514252176188E-4 0.0 0.0 18.232037166677273 0.0 22 2.828514252176188E-4 0.0 0.0 19.373342667430364 0.0 23 2.828514252176188E-4 0.0 0.0 20.442662480465575 0.0 24 2.828514252176188E-4 0.0 0.0 21.25494106083427 0.0 25 2.828514252176188E-4 0.0 0.0 21.97274726518028 0.0 26 2.828514252176188E-4 0.0 0.0 22.595373964940567 0.0 27 3.535642815220235E-4 0.0 0.0 23.200393163481053 0.0 28 3.535642815220235E-4 0.0 0.0 23.839566671616566 0.0 29 3.535642815220235E-4 0.0 0.0 24.512045935071455 0.0 30 3.535642815220235E-4 0.0 0.0 25.2480253434877 0.0 31 3.535642815220235E-4 0.0 0.0 25.961376637886534 0.0 32 3.535642815220235E-4 0.0 0.0 26.64729134403926 0.0 33 3.535642815220235E-4 0.0 0.0 27.307890847635008 0.0 34 3.535642815220235E-4 0.0 0.0 27.947276494339437 0.0 35 3.535642815220235E-4 0.0 0.0 28.60957310648649 0.0 36 3.535642815220235E-4 0.0 0.0 29.29089147697943 0.0 37 3.535642815220235E-4 0.0 0.0 29.968037788950408 0.0 38 3.535642815220235E-4 0.0 0.0 30.60721129708592 0.0 39 3.535642815220235E-4 0.0 0.0 31.254233932271227 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGA 45 3.8562575E-10 45.000004 22 CGCATAG 35 1.2121927E-7 45.000004 24 TATCTCG 50 2.1827873E-11 45.000004 1 TCGAACA 25 3.891262E-5 45.000004 18 CGTATTA 20 7.033839E-4 45.0 25 CCCTCGT 20 7.033839E-4 45.0 14 TAACGCC 20 7.033839E-4 45.0 31 TTAACGG 20 7.033839E-4 45.0 2 CTATTCG 20 7.033839E-4 45.0 1 ATAGTCG 30 2.165858E-6 44.999996 27 TATTGCG 100 0.0 42.750004 1 TTCCGCA 55 6.184564E-11 40.909092 1 CGATAAC 55 6.184564E-11 40.909092 16 TTCTTCG 405 0.0 40.0 1 CGAATAT 130 0.0 39.80769 14 GCGATCG 40 3.458972E-7 39.375 9 TACGGGA 270 0.0 39.166664 4 TTTCGCG 370 0.0 38.91892 1 TACGGGT 35 6.249309E-6 38.57143 4 TCTTGCG 415 0.0 38.493973 1 >>END_MODULE