SRR2933865.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933865.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1885202
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8691	0.46101160512242195	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	6452	0.3422444915717255	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	6042	0.32049615903229467	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	5137	0.2724906933050145	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	4806	0.2549328931329375	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	2929	0.15536796587315313	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2546	0.1350518405985141	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2370	0.12571597102061213	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	2167	0.11494789417791833	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4200	0.0	42.857143	1
TTTCGCG	530	0.0	40.33019	1
GTTACCG	70	0.0	38.571426	38
ATAACGC	35	6.2504187E-6	38.571426	11
TTGGGAC	3090	0.0	37.936893	5
CACGACG	30	1.1401992E-4	37.499996	26
GCGATGT	500	0.0	37.350002	9
CGCGACC	365	0.0	36.986298	10
TTTGGGA	7800	0.0	36.980766	4
TTTGGGC	4580	0.0	36.894108	4
TTGTTCG	465	0.0	36.774193	1
TGGGCGA	2420	0.0	36.446278	6
GGGCGAT	3550	0.0	36.316902	7
TAGTTCG	25	0.0021074496	36.000004	1
CGTTAGA	25	0.0021074496	36.000004	2
CCGTTGA	25	0.0021074496	36.000004	20
TTCGGGT	420	0.0	35.892857	4
TCAAGCG	240	0.0	35.625	17
GTTGGGA	2875	0.0	35.452175	4
TTGGGAG	4705	0.0	35.435707	5