SRR2933863.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933863.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	868572
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT	4201	0.4836674449556283	Illumina PCR Primer Index 7 (96% over 28bp)
CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	4066	0.468124692023229	Illumina PCR Primer Index 7 (96% over 27bp)
TCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	3258	0.3750984374352385	Illumina PCR Primer Index 7 (96% over 27bp)
GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC	3005	0.34597016712489004	Illumina PCR Primer Index 7 (96% over 27bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1417	0.16314134003859207	No Hit
TCCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG	1282	0.1475985871061927	Illumina PCR Primer Index 7 (96% over 26bp)
CGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG	998	0.1149012401965525	Illumina PCR Primer Index 7 (96% over 26bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTTTC	30	2.1648866E-6	45.000004	13
ATGATCG	25	3.8900158E-5	45.0	27
GTCGAAC	20	7.0323347E-4	45.0	45
ATTACCG	25	3.8900158E-5	45.0	8
ATCGTGA	25	3.8900158E-5	45.0	30
TTATACG	20	7.0323347E-4	45.0	1
AACGGTA	20	7.0323347E-4	45.0	25
ATCCCGC	20	7.0323347E-4	45.0	21
AATTCGT	20	7.0323347E-4	45.0	31
GCGATAT	20	7.0323347E-4	45.0	9
ATGCGAG	20	7.0323347E-4	45.0	42
AGGGCGT	25	3.8900158E-5	45.0	10
TAGCCGT	55	6.002665E-11	40.909092	44
CTATCGG	50	1.0804797E-9	40.5	2
TCTAGCG	50	1.0804797E-9	40.5	1
TGCGTTG	150	0.0	40.5	1
TTATCCG	45	1.9274012E-8	40.000004	1
GCGATGT	270	0.0	39.166668	9
CGGGTAC	115	0.0	39.130432	6
CGTTCGG	75	0.0	39.0	2