##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933863.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 868572 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.407110751900824 33.0 31.0 34.0 31.0 34.0 2 32.64047885494812 34.0 31.0 34.0 31.0 34.0 3 32.69482783235011 34.0 31.0 34.0 31.0 34.0 4 36.06701804801444 37.0 35.0 37.0 35.0 37.0 5 36.10453479964816 37.0 35.0 37.0 35.0 37.0 6 35.70146401219473 37.0 35.0 37.0 35.0 37.0 7 36.02645376549094 37.0 35.0 37.0 35.0 37.0 8 36.035888792178426 37.0 35.0 37.0 35.0 37.0 9 37.86660288381389 39.0 38.0 39.0 35.0 39.0 10 37.597150265032724 39.0 37.0 39.0 35.0 39.0 11 37.533465274036004 39.0 37.0 39.0 35.0 39.0 12 37.276291430071424 39.0 37.0 39.0 35.0 39.0 13 37.16429380638565 39.0 37.0 39.0 34.0 39.0 14 38.22509129928204 40.0 38.0 41.0 33.0 41.0 15 38.32891919150053 40.0 38.0 41.0 33.0 41.0 16 38.45222963669103 40.0 38.0 41.0 34.0 41.0 17 38.468070580216725 40.0 38.0 41.0 34.0 41.0 18 38.432385570798964 40.0 37.0 41.0 34.0 41.0 19 38.451904965851995 40.0 37.0 41.0 34.0 41.0 20 38.379707151508455 40.0 37.0 41.0 34.0 41.0 21 38.27014455911542 40.0 37.0 41.0 34.0 41.0 22 38.3131127874258 40.0 37.0 41.0 34.0 41.0 23 38.272277945869774 40.0 37.0 41.0 34.0 41.0 24 38.237636027871034 40.0 37.0 41.0 34.0 41.0 25 38.12966455285227 40.0 36.0 41.0 34.0 41.0 26 38.0651437071423 40.0 36.0 41.0 34.0 41.0 27 38.04726378469488 40.0 36.0 41.0 34.0 41.0 28 37.95749690296256 40.0 36.0 41.0 34.0 41.0 29 37.927879323763605 40.0 36.0 41.0 34.0 41.0 30 37.868503704931776 40.0 36.0 41.0 34.0 41.0 31 37.75145526220049 40.0 36.0 41.0 33.0 41.0 32 37.67011024992747 40.0 36.0 41.0 33.0 41.0 33 37.62353380030671 40.0 36.0 41.0 33.0 41.0 34 37.5491553952925 40.0 35.0 41.0 33.0 41.0 35 37.49816595515398 40.0 35.0 41.0 33.0 41.0 36 37.37768083705208 40.0 35.0 41.0 33.0 41.0 37 37.2893530991098 39.0 35.0 41.0 33.0 41.0 38 37.24851134966359 39.0 35.0 41.0 33.0 41.0 39 37.23044606549601 39.0 35.0 41.0 33.0 41.0 40 37.11179038698001 39.0 35.0 41.0 32.0 41.0 41 36.984171720939656 39.0 35.0 41.0 32.0 41.0 42 36.95806334995832 39.0 35.0 41.0 32.0 41.0 43 36.85079532842413 39.0 35.0 41.0 32.0 41.0 44 36.73000050657861 39.0 35.0 41.0 31.0 41.0 45 36.71816498804935 39.0 35.0 41.0 31.0 41.0 46 36.63911109269007 39.0 35.0 41.0 31.0 41.0 47 36.542353426083274 38.0 35.0 40.0 31.0 41.0 48 36.50030049322336 38.0 35.0 40.0 31.0 41.0 49 36.49422039853921 38.0 35.0 40.0 31.0 41.0 50 36.399712401505 38.0 35.0 40.0 31.0 41.0 51 35.3508517428607 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 11.0 10 20.0 11 17.0 12 19.0 13 14.0 14 11.0 15 13.0 16 34.0 17 64.0 18 124.0 19 258.0 20 421.0 21 712.0 22 1092.0 23 1606.0 24 2279.0 25 3319.0 26 4377.0 27 5819.0 28 6603.0 29 8091.0 30 10544.0 31 13960.0 32 19073.0 33 28960.0 34 57058.0 35 67729.0 36 64203.0 37 101545.0 38 187872.0 39 282522.0 40 199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.301580064749956 5.048976941462539 55.14177293304412 16.507670060743383 2 20.79079224289984 4.991641452867465 52.60243249839968 21.615133805833022 3 22.694721911367164 5.1454571411466175 49.83236853133649 22.327452416149725 4 20.153539372671464 4.944207273547847 49.864950746742934 25.03730260703776 5 19.496599015395386 6.250028782875801 48.5793923819787 25.67397981975012 6 22.223834063267063 7.32178794619214 51.44259773513306 19.011780255407725 7 81.71596597633818 2.747613323938603 10.183957115817686 5.352463583905537 8 82.94902437564186 3.691115992686847 7.8518533869385605 5.508006244732734 9 76.29937414514859 6.148252534044386 10.88844678391659 6.663926536890437 10 39.796125134128204 27.22330445835233 17.692142965695417 15.288427441824052 11 32.098778224488015 23.81541196354476 24.690756782396853 19.395053029570374 12 27.801725130443995 21.103949931611886 30.085703890984284 21.00862104695984 13 26.281528762152128 22.302699142961092 31.353762267261665 20.06200982762511 14 21.89720598868027 24.097599277895213 32.32386031324979 21.681334420174725 15 18.57128712415321 22.566465416799065 36.25329851756676 22.60894894148096 16 22.39722210709072 23.261053775622518 30.958746079772315 23.382978037514448 17 23.116333476096397 23.025609851572465 28.819487618758146 25.03856905357299 18 24.378289882704024 21.889146783456063 30.88241389314875 22.85014944069116 19 24.91629939717145 23.628438402343157 28.65531009519073 22.79995210529467 20 25.8212330123467 25.78577250936019 28.260524170707786 20.132470307585322 21 24.191431453005624 25.974588174613046 29.927052679570604 19.906927692810726 22 23.454589832506688 22.942254643253523 29.787743560695024 23.81541196354476 23 22.313176109752558 24.208701178486066 28.9927605310786 24.485362180682777 24 22.325495180595276 23.95782963300682 29.254799832368533 24.461875354029374 25 22.203686050206546 25.59476934554648 26.978765145549243 25.222779458697726 26 20.947601350262268 25.986446719442945 27.19843605366049 25.86751587663429 27 21.396153686740995 25.858075093371646 28.92851715229135 23.817254067596007 28 19.661352196478816 26.072219689329152 29.387316192555136 24.87911192163689 29 21.94820924459918 25.37947343455695 27.968435547081878 24.70388177376199 30 24.284112313084005 24.82603629866033 27.860327065574296 23.029524322681365 31 23.7040797999475 27.479817447488518 25.967795415924066 22.848307336639913 32 24.906628350902402 26.278189948559245 25.72509820717223 23.090083493366123 33 24.514490450993122 24.528306231377478 25.046858521803607 25.91034479582579 34 21.21585775272516 26.382383958957924 28.01955393450399 24.382204353812924 35 21.810627098271645 26.305591246321548 27.19267947850034 24.691102176906462 36 24.075609160783447 26.91659413381965 25.648075231529454 23.359721473867452 37 22.794656056147332 28.0510999663816 26.502696379805013 22.651547597666056 38 22.199426184588038 26.97070594032504 26.44892996780923 24.38093790727769 39 22.005659864697456 23.907286903100722 27.030804584996982 27.05624864720484 40 22.89159678184422 23.86480337841883 28.327760968578307 24.915838871158638 41 20.34016753936346 24.751546216088016 27.239422868800744 27.668863375747776 42 21.725890311914267 23.279820210644598 28.823747484376653 26.17054199306448 43 22.642912734925833 22.795577108172953 28.101872959294106 26.459637197607105 44 22.634508135192018 23.28580704881115 27.61095222963669 26.46873258636014 45 21.818801434999056 23.552451610229202 26.303979405276706 28.324767549495032 46 22.33228793928425 24.268109034138792 28.016560515420714 25.383042511156244 47 19.747470560874632 25.61249959703974 30.464831931031622 24.175197911054006 48 20.540150960427 25.06113482820077 29.095112437426028 25.3036017739462 49 22.97552764767918 22.318587290403098 29.558286474811528 25.14759858710619 50 21.880627052219044 23.017665777851462 28.14723477155607 26.954472398373426 51 20.08365455022727 23.24447483916129 26.405870785611324 30.26599982500012 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 148.0 1 540.0 2 932.0 3 1774.0 4 2616.0 5 1803.0 6 990.0 7 1070.5 8 1151.0 9 1234.0 10 1317.0 11 1271.5 12 1226.0 13 1294.5 14 1363.0 15 1300.5 16 1238.0 17 1318.0 18 1398.0 19 1509.0 20 1620.0 21 1901.0 22 2182.0 23 2522.0 24 2862.0 25 3653.0 26 5281.5 27 6119.0 28 7796.5 29 9474.0 30 10414.5 31 11355.0 32 13388.5 33 15422.0 34 17387.5 35 19353.0 36 21665.0 37 23977.0 38 26328.5 39 28680.0 40 32280.5 41 35881.0 42 40718.0 43 45555.0 44 51044.5 45 56534.0 46 66659.0 47 76784.0 48 89550.0 49 102316.0 50 99286.0 51 96256.0 52 81953.5 53 67651.0 54 59889.0 55 52127.0 56 48031.0 57 43935.0 58 40933.0 59 37931.0 60 34446.0 61 30961.0 62 27072.0 63 23183.0 64 20722.5 65 18262.0 66 15957.5 67 13653.0 68 11848.5 69 10044.0 70 9154.5 71 8265.0 72 6550.5 73 4836.0 74 4134.5 75 2501.0 76 1569.0 77 1198.0 78 827.0 79 640.0 80 453.0 81 298.5 82 144.0 83 102.5 84 61.0 85 44.0 86 27.0 87 19.0 88 11.0 89 7.0 90 3.0 91 3.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 868572.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.11994461282895 #Duplication Level Percentage of deduplicated Percentage of total 1 69.6829665107704 20.988470917620187 2 12.276680606912388 7.395458798191848 3 4.959973539000821 4.481823848274057 4 2.4306625306513836 2.9284568318279325 5 1.534757022885277 2.31133982617274 6 0.9533856787473285 1.7229554303120318 7 0.7101005284288147 1.4971732010071526 8 0.5621149684580498 1.3544697372798837 9 0.42834693839692556 1.1611607453631225 >10 6.058774207315673 44.05588989944415 >50 0.33848225284179767 6.2170121547854205 >100 0.05757289165500215 3.0473471804510015 >500 0.0038639524600672507 0.833295364040221 >1k 0.00231837147604035 2.0051460652303024 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT 4201 0.4836674449556283 Illumina PCR Primer Index 7 (96% over 28bp) CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 4066 0.468124692023229 Illumina PCR Primer Index 7 (96% over 27bp) TCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 3258 0.3750984374352385 Illumina PCR Primer Index 7 (96% over 27bp) GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 3005 0.34597016712489004 Illumina PCR Primer Index 7 (96% over 27bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1417 0.16314134003859207 No Hit TCCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG 1282 0.1475985871061927 Illumina PCR Primer Index 7 (96% over 26bp) CGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG 998 0.1149012401965525 Illumina PCR Primer Index 7 (96% over 26bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5078450606282496 0.0 2 0.0 0.0 0.0 1.7985843430366164 0.0 3 0.0 0.0 0.0 2.5422187222245247 0.0 4 0.0 0.0 0.0 3.3163629497612175 0.0 5 0.0 0.0 0.0 4.651658123909129 0.0 6 0.0 0.0 0.0 5.581114749266613 0.0 7 0.0 0.0 0.0 6.4694694279806395 0.0 8 0.0 0.0 0.0 7.869007980915802 0.0 9 0.0 0.0 0.0 8.619089724283077 0.0 10 0.0 0.0 0.0 9.972805938943461 0.0 11 0.0 0.0 0.0 11.999005263812327 0.0 12 0.0 0.0 0.0 14.042934840174448 0.0 13 0.0 0.0 0.0 14.670286401127367 0.0 14 0.0 0.0 0.0 14.903657958119764 0.0 15 0.0 0.0 0.0 15.2591840400105 0.0 16 0.0 0.0 0.0 16.03125590048954 0.0 17 0.0 0.0 0.0 17.06444601023289 0.0 18 0.0 0.0 0.0 18.25502088485468 0.0 19 0.0 0.0 0.0 19.037224317615582 0.0 20 0.0 0.0 0.0 19.92362176077516 0.0 21 0.0 0.0 0.0 21.065841404051707 0.0 22 0.0 0.0 0.0 22.243751813321175 0.0 23 1.1513150320295842E-4 0.0 0.0 23.29732019913145 0.0 24 1.1513150320295842E-4 0.0 0.0 24.114523608866048 0.0 25 1.1513150320295842E-4 0.0 0.0 24.845723785708035 0.0 26 1.1513150320295842E-4 0.0 0.0 25.525920706631116 0.0 27 1.1513150320295842E-4 0.0 0.0 26.23052550623322 0.0 28 1.1513150320295842E-4 0.0 0.0 26.93098557172002 0.0 29 1.1513150320295842E-4 0.0 0.0 27.701445591154215 0.0 30 1.1513150320295842E-4 0.0 0.0 28.531543729247545 0.0 31 1.1513150320295842E-4 0.0 0.0 29.250539966750022 0.0 32 1.1513150320295842E-4 0.0 0.0 29.97701975196069 0.0 33 1.1513150320295842E-4 0.0 0.0 30.66044035497345 0.0 34 1.1513150320295842E-4 0.0 0.0 31.360670157453843 0.0 35 1.1513150320295842E-4 0.0 0.0 32.13205122891367 0.0 36 1.1513150320295842E-4 0.0 0.0 32.816853409964864 0.0 37 1.1513150320295842E-4 0.0 0.0 33.50867861271144 0.0 38 1.1513150320295842E-4 0.0 0.0 34.29134257148515 0.0 39 1.1513150320295842E-4 0.0 0.0 35.49849638256817 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTTTC 30 2.1648866E-6 45.000004 13 ATGATCG 25 3.8900158E-5 45.0 27 GTCGAAC 20 7.0323347E-4 45.0 45 ATTACCG 25 3.8900158E-5 45.0 8 ATCGTGA 25 3.8900158E-5 45.0 30 TTATACG 20 7.0323347E-4 45.0 1 AACGGTA 20 7.0323347E-4 45.0 25 ATCCCGC 20 7.0323347E-4 45.0 21 AATTCGT 20 7.0323347E-4 45.0 31 GCGATAT 20 7.0323347E-4 45.0 9 ATGCGAG 20 7.0323347E-4 45.0 42 AGGGCGT 25 3.8900158E-5 45.0 10 TAGCCGT 55 6.002665E-11 40.909092 44 CTATCGG 50 1.0804797E-9 40.5 2 TCTAGCG 50 1.0804797E-9 40.5 1 TGCGTTG 150 0.0 40.5 1 TTATCCG 45 1.9274012E-8 40.000004 1 GCGATGT 270 0.0 39.166668 9 CGGGTAC 115 0.0 39.130432 6 CGTTCGG 75 0.0 39.0 2 >>END_MODULE