FastQCFastQC Report
Sat 14 Jan 2017
SRR2933861.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933861.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences691393
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC393255.687792615777134No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCG336134.861634410530624No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTC251033.6307859639886435No Hit
GCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC140522.0324186099656782No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTCTACGT131481.9016680816843676No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTA81581.1799367364147453No Hit
GAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT72231.044702506389275No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTC64810.9373829356097039No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCT60690.8777930930744163No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT48880.7069785201759347No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC48850.7065446135555321No Hit
TCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGC40570.5867863863244205No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGT27970.4045456057553374No Hit
TGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCTT24170.34958410050434413Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATG23630.3417737813370977No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTAT19170.27726633043724774No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18100.26179032764288906No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTTCTACG16530.23908254784182079No Hit
CGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG14080.20364684050894355No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTT13330.19279917499887908No Hit
TCCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG10900.15765273874627023No Hit
TGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTG9470.13696985650708063No Hit
TTCCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT9040.13075052828131034No Hit
GAATGATACGGCGACCCTGTCTCTTATACACATCTGACGCCTTCTACGTCG8120.11744405858896459No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCC7370.10659639307890013No Hit
GAATGCTACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGC6930.10023242931299564No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTGCG207.0313335E-445.01
ATAACCG207.0313335E-445.013
CTTACGA207.0313335E-445.024
TACGGCT42800.044.1063087
ACGGCTG43100.043.851518
TGATACC38600.043.2512934
GATACCT38850.043.0308885
TTTCGCG1100.042.9545441
GGCGACT8800.042.95454410
TTTCTCG2000.042.751
CGGCTGT45050.042.602679
CGTTTTT11950.042.5523031
CGGGCCA800.042.18756
CCGGTGA1600.042.187518
ATGATAC132550.042.1482473
GAATCTG29200.042.0719151
TACGGCC3050.042.0491837
ACGGCCT3000.042.08
AATGATA132300.041.921772
GAATGAT139450.041.918251