##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933855.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 388074 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.368182356973154 25.0 16.0 31.0 16.0 33.0 2 25.22712678509769 28.0 16.0 31.0 16.0 34.0 3 26.34076232883419 30.0 16.0 33.0 16.0 34.0 4 30.899392899292405 33.0 28.0 35.0 19.0 37.0 5 33.153560918793836 35.0 32.0 35.0 28.0 37.0 6 31.171722403459135 35.0 28.0 36.0 17.0 37.0 7 33.07730484392152 35.0 32.0 35.0 28.0 37.0 8 31.740273762220607 35.0 30.0 36.0 17.0 37.0 9 34.06710060452388 35.0 32.0 38.0 28.0 39.0 10 33.50849064869071 35.0 32.0 37.0 27.0 39.0 11 34.18029551065003 35.0 32.0 39.0 27.0 39.0 12 34.4034359426295 35.0 33.0 39.0 27.0 39.0 13 34.58236831119838 35.0 33.0 38.0 29.0 39.0 14 34.43102346459696 36.0 32.0 39.0 27.0 40.0 15 34.99678669532099 37.0 33.0 39.0 27.0 40.0 16 34.69825600272113 36.0 32.0 39.0 27.0 40.0 17 34.004161577431105 36.0 32.0 38.0 27.0 40.0 18 34.32980565562238 36.0 32.0 38.0 27.0 40.0 19 34.059117590974914 36.0 32.0 39.0 27.0 40.0 20 33.7913439189433 36.0 31.0 39.0 25.0 40.0 21 33.87337466565655 36.0 32.0 39.0 25.0 40.0 22 35.179981137618086 37.0 33.0 39.0 28.0 40.0 23 35.41732246942593 37.0 33.0 39.0 29.0 40.0 24 35.762751434004855 37.0 34.0 39.0 30.0 40.0 25 33.631503269994894 36.0 32.0 39.0 24.0 40.0 26 34.780178522652896 37.0 33.0 39.0 27.0 40.0 27 34.771917211665816 37.0 33.0 39.0 27.0 40.0 28 34.7829975726279 37.0 33.0 39.0 26.0 40.0 29 35.30206352396708 37.0 34.0 40.0 27.0 40.0 30 33.35826929915429 36.0 31.0 39.0 23.0 40.0 31 34.23358431639326 36.0 32.0 39.0 25.0 40.0 32 34.63931878971536 37.0 33.0 39.0 27.0 40.0 33 34.915858831047686 37.0 33.0 39.0 27.0 40.0 34 35.25124847322933 38.0 34.0 40.0 28.0 40.0 35 35.41608816875132 38.0 34.0 40.0 29.0 41.0 36 35.35241732246943 38.0 34.0 40.0 27.0 41.0 37 35.84783314522488 38.0 35.0 40.0 30.0 41.0 38 34.68642836160114 37.0 33.0 40.0 25.0 40.0 39 34.840844787334376 37.0 33.0 40.0 27.0 40.0 40 34.40692239109036 37.0 33.0 39.0 24.0 40.0 41 33.9915943866376 37.0 33.0 39.0 24.0 40.0 42 35.05107788720708 37.0 34.0 40.0 28.0 40.0 43 34.94959724176317 37.0 34.0 40.0 27.0 40.0 44 35.70723367192855 38.0 35.0 40.0 30.0 41.0 45 35.830857001499716 38.0 35.0 40.0 30.0 41.0 46 35.493766652751795 38.0 35.0 40.0 28.0 41.0 47 34.7063575503641 37.0 33.0 40.0 26.0 41.0 48 35.188958806825504 37.0 34.0 40.0 27.0 41.0 49 35.54921484046857 38.0 34.0 40.0 29.0 41.0 50 35.08277545004303 37.0 34.0 40.0 26.0 41.0 51 34.71459566989801 37.0 33.0 40.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 4.0 11 12.0 12 9.0 13 11.0 14 15.0 15 32.0 16 83.0 17 241.0 18 645.0 19 1213.0 20 1796.0 21 2119.0 22 2272.0 23 2347.0 24 2876.0 25 3685.0 26 5118.0 27 7155.0 28 9251.0 29 12561.0 30 16670.0 31 22444.0 32 30074.0 33 38526.0 34 45434.0 35 52294.0 36 54336.0 37 48035.0 38 26273.0 39 2541.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.56844828563625 3.345753644923391 33.81107726876833 12.274720800672037 2 14.035982828017337 36.51777753727382 32.5551312378567 16.891108396852147 3 13.794018666542978 36.47654828718234 35.44349788957776 14.285935156696919 4 14.754917876487475 2.9589717425027184 63.903791544911535 18.382318836098268 5 39.02683508815329 3.8871452351871034 35.608672572756745 21.477347103902865 6 14.67555157006138 30.772223854213372 38.63232270134046 15.91990187438478 7 53.65626143467483 1.696583641264295 39.27601436839366 5.3711405556672185 8 48.36809474481671 26.036786798394118 14.684312785705819 10.91080567108335 9 45.18854651432459 3.8098403912655834 15.465091709313173 35.536521385096655 10 39.97098491524812 19.321315006931666 22.639496590856385 18.068203486963828 11 33.493869725877026 19.401196678983908 28.333256028489412 18.771677566649657 12 22.50859372181594 14.481774094631437 31.097934929936045 31.911697253616577 13 23.041997144874433 20.10003246803445 42.191437715487254 14.666532671603868 14 19.402227410236193 30.891530996665583 23.508145353721197 26.198096239377026 15 9.998350829996342 22.728397161366132 45.44468323051789 21.828568778119635 16 11.033462690105496 24.668748743796286 24.541711116951923 39.7560774491463 17 13.013239742935626 29.192370527270572 35.84290624983895 21.951483479954852 18 11.504764555213697 23.823806799734072 33.434602678870526 31.23682596618171 19 13.145173343228352 27.471307018764463 28.639383210418636 30.744136427588554 20 16.521848925720352 24.789086617500786 43.83700015976334 14.852064297015518 21 19.454537021289752 35.80167699974747 26.462221122775553 18.28156485618722 22 13.448466014213784 21.342578992666347 35.95448290789901 29.25447208522086 23 17.28845529460876 33.6062194323763 27.83567051644789 21.269654756567046 24 21.478893200781293 22.658822801836763 24.19667383024887 31.665610167133075 25 13.1593458979473 39.65790029736597 20.427805006261693 26.754948798425044 26 18.332586053175426 21.003726093477017 30.390853290867202 30.272834562480348 27 21.530945129021784 28.895262243798864 21.3266026582559 28.247189968923454 28 14.280781500435483 29.03312254879224 34.234450130645186 22.45164582012709 29 29.874972299097596 16.865855481171117 24.311600364878863 28.947571854852427 30 15.549611672000701 30.58076552410107 30.857516865340116 23.01210593855811 31 24.570571592015956 25.226116668470443 22.573014425083876 27.630297314429725 32 29.22020027108232 29.29750511500384 23.499126455263685 17.98316815865015 33 15.62691651592222 18.334132150053854 27.725639955266264 38.31331137875766 34 30.949767312419795 20.123739286837047 30.514798723954712 18.41169467678845 35 17.922355014765227 16.700680797992135 29.05219107695955 36.32477311028309 36 24.38890520880038 25.936032818483074 22.826574313146462 26.84848765957008 37 20.557934826862915 18.73457124156733 33.134402201641954 27.573091729927796 38 19.221076392646765 28.436329153718106 27.499909811015428 24.842684642619705 39 30.216144343604572 19.515865530800827 32.2634342934595 18.004555832135107 40 17.433273035555075 17.287424563356474 43.8264351644274 21.45286723666105 41 16.532156238243225 22.575333570401522 31.63288444987296 29.259625741482292 42 18.563985219313842 15.817601797595305 42.01930559635533 23.59910738673552 43 25.3915490344625 16.64888655256472 22.898725500806545 35.06083891216624 44 21.00836438411231 16.045651087163787 33.70001597633441 29.245968552389495 45 17.710282059607188 17.029484067471667 29.80823245051202 35.45200142240913 46 33.19676144240532 22.13366522879657 25.410617562629806 19.25895576616831 47 12.751434004854744 16.657905451022227 49.43258244561604 21.158078098506987 48 20.60560614728119 22.57662198446688 28.64530991511928 28.17246195313265 49 17.949669392950828 13.361884589021681 45.501115766580604 23.187330251446888 50 24.79449795657529 13.788865010281546 30.698526569674854 30.718110463468307 51 19.414338502450565 14.5358874853765 27.942866566685737 38.1069074454872 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 69.0 1 145.0 2 221.0 3 1025.5 4 1830.0 5 1292.0 6 754.0 7 825.5 8 897.0 9 1007.0 10 1117.0 11 1228.5 12 1340.0 13 1302.5 14 1265.0 15 1182.5 16 1100.0 17 1078.5 18 1057.0 19 1050.0 20 1043.0 21 1067.0 22 1091.0 23 1152.5 24 1214.0 25 1469.0 26 2113.5 27 2503.0 28 2782.0 29 3061.0 30 3475.0 31 3889.0 32 4445.5 33 5002.0 34 5586.0 35 6170.0 36 6631.0 37 7092.0 38 7674.0 39 8256.0 40 9131.5 41 10007.0 42 11544.0 43 13081.0 44 15817.5 45 18554.0 46 69910.5 47 121267.0 48 88235.5 49 55204.0 50 49429.5 51 43655.0 52 32159.5 53 20664.0 54 17522.5 55 14381.0 56 12705.5 57 11030.0 58 9950.5 59 8871.0 60 7981.0 61 7091.0 62 6158.0 63 5225.0 64 4178.5 65 3132.0 66 2517.0 67 1902.0 68 1609.0 69 1316.0 70 1121.5 71 927.0 72 725.0 73 523.0 74 370.5 75 186.0 76 154.0 77 121.0 78 88.0 79 61.0 80 34.0 81 34.5 82 35.0 83 27.5 84 20.0 85 10.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 388074.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.251975917537756 #Duplication Level Percentage of deduplicated Percentage of total 1 72.84183119799302 19.12241998399063 2 11.090488283034286 5.822944626399015 3 4.23506384182827 3.33536381954732 4 2.2125020638051898 2.3233020358606575 5 1.3600301681164695 1.7851739610259192 6 0.9942881414234529 1.5661217006245116 7 0.7434675482241276 1.3662244520015447 8 0.6635247892761754 1.393506943101398 9 0.5855806113972384 1.3835383297359605 >10 5.045386530017123 21.957178267910653 >50 0.12291197131935605 2.213294062679081 >100 0.08194131421290404 4.398256282431845 >500 0.003997137278678246 0.6330068239000383 >1k 0.011991411836034737 6.670837349753035 >5k 0.003997137278678246 7.527350934516244 >10k+ 0.002997852959008684 18.50148042652217 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGC 29430 7.583605188701124 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCG 23174 5.971541510124358 No Hit GAATCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTC 17923 4.618449058684684 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAGTTTCT 8859 2.2828120410024892 No Hit GCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC 8801 2.267866437844329 Illumina PCR Primer Index 2 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTA 5743 1.479872395470967 No Hit GAACTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCT 5291 1.3633997639625433 Illumina PCR Primer Index 2 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTC 4575 1.178898869803182 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCT 3997 1.0299582038477197 No Hit CTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGCT 2813 0.724861753170787 Illumina PCR Primer Index 2 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC 2272 0.5854553512989791 Illumina PCR Primer Index 2 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGC 2034 0.5241268417879064 Illumina PCR Primer Index 2 (95% over 23bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGT 2030 0.5230961105356196 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATG 1861 0.4795477151264965 No Hit TGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTGCTT 1400 0.36075593830042724 Illumina PCR Primer Index 2 (96% over 25bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTAT 1250 0.32210351633966716 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1105 0.28473950844426577 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTT 1055 0.2718553677906791 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGCAGTTTC 1037 0.2672170771553879 No Hit CGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTG 779 0.2007349113828806 Illumina PCR Primer Index 2 (95% over 22bp) GAATGCTACGGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGC 577 0.14868298314239037 No Hit GAATGATACGGCGACCCTGTCTCTTATACACATCTGACGCGCAGTTTCTCG 529 0.13631420811494713 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGC 528 0.13605652530187543 No Hit TCCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTG 497 0.12806835809665168 Illumina PCR Primer Index 2 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCGTCTTCTG 411 0.10590763617248256 Illumina PCR Primer Index 2 (95% over 22bp) GAATGCTACCTGTCTCTTATACACATCTGACGCGCAGTTTCTCGTATGCCG 404 0.10410385648098044 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8178852486896829 0.0 2 0.0 0.0 0.0 4.532640681931796 0.0 3 0.0 0.0 0.0 5.405154686992687 0.0 4 0.0 0.0 0.0 8.18194468065369 0.0 5 0.0 0.0 0.0 14.854641125146236 0.0 6 0.0 0.0 0.0 15.944639424439668 0.0 7 0.0 0.0 0.0 17.83525822394698 0.0 8 0.0 0.0 0.0 20.16110329473245 0.0 9 0.0 0.0 0.0 20.645289300494234 0.0 10 0.0 0.0 0.0 28.037951524709204 0.0 11 0.0 0.0 0.0 29.926766544525012 0.0 12 0.0 0.0 0.0 39.77823817107046 0.0 13 0.0 0.0 0.0 40.771090049835855 0.0 14 0.0 0.0 0.0 41.286455675979326 0.0 15 0.0 0.0 0.0 43.25824456160423 0.0 16 0.0 0.0 0.0 44.359323221859746 0.0 17 0.0 0.0 0.0 45.256317094162455 0.0 18 0.0 0.0 0.0 45.96314105041822 0.0 19 0.0 0.0 0.0 49.21973644201879 0.0 20 0.0 0.0 0.0 50.12626457840515 0.0 21 0.0 0.0 0.0 50.91425862077851 0.0 22 0.0 0.0 0.0 51.80661420244593 0.0 23 0.0 0.0 0.0 52.471435860171 0.0 24 0.0 0.0 0.0 53.0311229301628 0.0 25 0.0 0.0 0.0 53.48309858429062 0.0 26 0.0 0.0 0.0 53.96857300411777 0.0 27 0.0 0.0 0.0 54.49553435684947 0.0 28 0.0 0.0 0.0 54.90447698119431 0.0 29 0.0 0.0 0.0 55.347433736864616 0.0 30 0.0 0.0 0.0 55.85738802393358 0.0 31 0.0 0.0 0.0 56.32508232965878 0.0 32 0.0 0.0 0.0 56.77551188690817 0.0 33 0.0 0.0 0.0 57.19347340971052 0.0 34 0.0 0.0 0.0 57.57973994650505 0.0 35 0.0 0.0 0.0 57.98017903801852 0.0 36 0.0 0.0 0.0 58.38113349515814 0.0 37 0.0 0.0 0.0 58.7944567273252 0.0 38 0.0 0.0 0.0 59.20494544854847 0.0 39 0.0 0.0 0.0 59.63321428387369 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATAG 30 2.1617725E-6 45.000004 31 GTTTGCG 30 2.1617725E-6 45.000004 1 CTGTCGG 30 2.1617725E-6 45.000004 2 GGCACCG 60 0.0 45.000004 8 ATAGCAA 30 2.1617725E-6 45.000004 10 CATAGGG 30 2.1617725E-6 45.000004 23 CGAGATA 30 2.1617725E-6 45.000004 19 ACCCGCG 30 2.1617725E-6 45.000004 39 ACATAGG 30 2.1617725E-6 45.000004 22 TCGCCTG 20 7.0275046E-4 45.0 1 CGGGTTG 35 1.209155E-7 45.0 6 CGGGTAG 20 7.0275046E-4 45.0 6 TGATAGT 25 3.886014E-5 45.0 32 CAAACTG 25 3.886014E-5 45.0 26 ACACGCG 25 3.886014E-5 45.0 36 ACGCCGG 20 7.0275046E-4 45.0 27 CGCGGGT 20 7.0275046E-4 45.0 4 CGCGGAT 25 3.886014E-5 45.0 42 CGACGAA 20 7.0275046E-4 45.0 19 CGTGCGG 25 3.886014E-5 45.0 2 >>END_MODULE