##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933846.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 682141 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.707136794299124 30.0 16.0 33.0 16.0 34.0 2 26.764872658292052 31.0 16.0 33.0 16.0 34.0 3 27.840661974577102 31.0 25.0 34.0 16.0 34.0 4 31.74646590660875 35.0 28.0 35.0 19.0 37.0 5 33.422453715580794 35.0 33.0 37.0 28.0 37.0 6 32.04246922557066 35.0 32.0 37.0 17.0 37.0 7 33.16820862548945 35.0 32.0 35.0 28.0 37.0 8 32.56220488139549 35.0 32.0 37.0 25.0 37.0 9 34.320441081829124 35.0 32.0 39.0 28.0 39.0 10 33.277205152600416 35.0 31.0 37.0 27.0 39.0 11 33.92067182591283 35.0 32.0 38.0 27.0 39.0 12 34.23921007533633 35.0 32.0 39.0 27.0 39.0 13 34.47284505696037 35.0 33.0 38.0 27.0 39.0 14 34.41372384888168 37.0 32.0 39.0 26.0 40.0 15 34.993428044934994 37.0 33.0 39.0 27.0 40.0 16 34.79750374189501 36.0 32.0 39.0 27.0 40.0 17 34.17332047186726 36.0 32.0 38.0 27.0 40.0 18 34.425778541386606 36.0 32.0 39.0 27.0 40.0 19 34.27103194207649 36.0 32.0 39.0 27.0 40.0 20 34.3633075859683 36.0 32.0 39.0 27.0 40.0 21 34.00048083900543 36.0 32.0 39.0 25.0 40.0 22 35.08338012229143 37.0 33.0 39.0 27.0 40.0 23 35.61555895335422 37.0 34.0 39.0 29.0 40.0 24 35.870092840043334 38.0 34.0 40.0 30.0 40.0 25 33.80458438944441 36.0 32.0 39.0 24.0 40.0 26 34.65335612432034 37.0 33.0 39.0 27.0 40.0 27 35.01007709549785 37.0 33.0 39.0 27.0 40.0 28 35.039647228358945 37.0 33.0 39.0 27.0 40.0 29 35.5823649362815 38.0 34.0 40.0 29.0 40.0 30 33.35112242190397 36.0 31.0 39.0 23.0 40.0 31 34.25265450984474 36.0 32.0 39.0 25.0 40.0 32 34.57631926537182 37.0 33.0 39.0 27.0 40.0 33 35.28326548323587 38.0 34.0 39.0 28.0 40.0 34 35.62913825733976 38.0 35.0 40.0 30.0 41.0 35 35.49357684115161 38.0 34.0 40.0 28.0 41.0 36 35.550991657150064 38.0 35.0 40.0 28.0 41.0 37 35.81276305045438 38.0 35.0 40.0 30.0 41.0 38 35.42420262086577 38.0 34.0 40.0 29.0 41.0 39 35.4223818829245 38.0 34.0 40.0 29.0 41.0 40 34.93954182493062 37.0 33.0 40.0 26.0 41.0 41 34.515076794973474 37.0 33.0 39.0 25.0 40.0 42 35.137351368705296 37.0 34.0 40.0 27.0 41.0 43 35.30762701552905 38.0 34.0 40.0 28.0 41.0 44 35.97538778639607 38.0 35.0 40.0 30.0 41.0 45 36.20027970756779 38.0 35.0 40.0 31.0 41.0 46 35.90153355391334 38.0 35.0 40.0 30.0 41.0 47 35.48155733198855 38.0 34.0 40.0 28.0 41.0 48 35.7248999840209 38.0 35.0 40.0 29.0 41.0 49 35.89873208031771 38.0 35.0 40.0 30.0 41.0 50 35.57160323158995 38.0 35.0 40.0 28.0 41.0 51 35.27294943420788 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 6.0 10 9.0 11 12.0 12 16.0 13 23.0 14 38.0 15 51.0 16 132.0 17 377.0 18 1030.0 19 1948.0 20 2704.0 21 3470.0 22 3622.0 23 3926.0 24 4753.0 25 6170.0 26 8406.0 27 11190.0 28 14679.0 29 19460.0 30 26399.0 31 35315.0 32 47718.0 33 61708.0 34 74244.0 35 89316.0 36 99265.0 37 99485.0 38 59696.0 39 6970.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.405076076646914 3.2921346173298485 40.920132348004294 14.382656958018943 2 16.173049266940414 25.670059415868568 40.28756518080573 17.869326136385293 3 15.99566658506086 25.644698090277522 41.348342937897 17.011292386764612 4 16.219227403132198 3.566124892067769 60.0950536619262 20.119594042873835 5 33.218059022987916 4.543342212240578 39.814789024556504 22.423809740215 6 17.752927913730446 22.657485769071204 43.1325781619929 16.45700815520545 7 65.05546507247035 1.8076907853361694 28.48912468243369 4.647719459759786 8 62.23815897299825 18.659338758409184 11.323758577772045 7.778743690820519 9 58.608704065581755 3.9356965788597957 11.897393647354432 25.558205708204024 10 41.82610340090978 20.46395100133257 20.257542062418178 17.452403535339467 11 32.42232910791171 22.270615605864478 26.548763378832234 18.75829190739158 12 24.905994508466726 16.872904575447013 29.68682427826505 28.534276637821215 13 24.71116675291472 19.992347623145363 38.14973737101274 17.14674825292718 14 20.542380534229725 27.988201852696143 25.84509654162409 25.624321071450034 15 14.278866099530743 23.52372896512598 40.76327328220998 21.434131653133296 16 16.26086102433368 24.725973075947643 26.417852027659972 32.5953138720587 17 16.93315604838296 27.99069400607792 33.82731722620397 21.248832719335155 18 15.919142816514476 24.61162721490132 31.789615343455385 27.679614625128824 19 17.206120142316617 27.75965672786125 28.17115523037026 26.86306789945187 20 20.72137578594455 25.53973445372731 38.17114057064448 15.567749189683658 21 22.277065885205552 32.45076897591554 27.26679674730004 18.005368391578866 22 17.736655618120007 21.731137697338234 34.01232296548661 26.519883719055155 23 19.54566577877594 30.608041445976713 28.651114652249316 21.195178122998033 24 21.915117255816615 23.270848695504302 26.14356855840655 28.67046549027254 25 16.200169759624476 34.838838304690675 22.979559944351678 25.98143199133317 26 16.92201465679383 23.75579242414691 30.35003027233373 28.97216264672553 27 20.754799960711935 30.609507418554227 24.26697706192708 24.36871555880676 28 14.32958875071283 28.71195251421627 32.895838250449685 24.062620484621213 29 20.487113368057337 21.87245745381087 25.421723661237195 32.2187055168946 30 17.19497875072749 33.61401821617525 26.826271987756193 22.364731045341067 31 22.998031198828393 26.71046015413236 21.54598536079784 28.745523286241408 32 22.234259485942058 31.956296425519064 20.90887367860897 24.900570409929912 33 19.214209378999357 23.25677535876014 23.20150819258775 34.32750706965276 34 25.679588237622426 24.586119292052523 23.21968625254896 26.514606217776088 35 17.736802215377757 30.054490200706308 23.65346753823623 28.555240045679703 36 17.069344900834285 29.59520099217024 25.03104196932892 28.304412137666553 37 17.06392080229747 30.2529828877021 28.321417419565748 24.361678890434675 38 18.07734764513495 30.596900054387582 21.793588129140456 29.532164171337012 39 24.3983282048726 22.84381088367361 25.402666017729477 27.355194893724317 40 19.067905315763163 26.00048963484089 25.93144232643984 29.0001627229561 41 22.998617587859403 26.337076938638788 27.35255614308479 23.311749330417026 42 17.920488579340635 27.43039928695094 30.533716636296603 24.115395497411825 43 20.450757248134916 21.585420023133047 29.276498553818055 28.687324174913986 44 21.052099199432377 22.59576832355774 29.696059905503407 26.656072571506478 45 19.171696174251366 21.818656260215995 26.418145222175475 32.59150234335716 46 26.183003220741753 25.64367190947326 25.003481684871602 23.169843184913383 47 14.734636973880766 21.881839678306978 39.3298452959139 24.053678051898363 48 22.05936895744428 24.826538794765305 25.807567643639658 27.306524604150756 49 19.005015092187687 20.603804785227688 35.879825431985466 24.51135469059916 50 22.47585176671685 19.24821994279775 30.29842803760513 27.977500252880272 51 19.286335229813194 19.00985280169349 26.973895426312154 34.72991654218116 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 87.0 1 324.5 2 562.0 3 2043.0 4 3524.0 5 2474.0 6 1424.0 7 1469.0 8 1514.0 9 1569.0 10 1624.0 11 1657.5 12 1691.0 13 1633.0 14 1575.0 15 1540.5 16 1506.0 17 1454.0 18 1402.0 19 1495.0 20 1588.0 21 1763.0 22 1938.0 23 2232.0 24 2526.0 25 2817.5 26 4111.5 27 5114.0 28 6147.5 29 7181.0 30 8165.5 31 9150.0 32 10627.0 33 12104.0 34 13398.0 35 14692.0 36 15938.5 37 17185.0 38 18755.5 39 20326.0 40 21804.5 41 23283.0 42 25122.5 43 26962.0 44 31427.5 45 35893.0 46 96543.5 47 157194.0 48 120067.5 49 82941.0 50 76092.0 51 69243.0 52 55861.5 53 42480.0 54 36854.5 55 31229.0 56 28617.5 57 26006.0 58 24129.5 59 22253.0 60 20741.5 61 19230.0 62 16143.5 63 13057.0 64 10593.0 65 8129.0 66 6814.5 67 5500.0 68 4472.5 69 3445.0 70 2893.5 71 2342.0 72 1803.5 73 1265.0 74 1070.5 75 679.0 76 482.0 77 342.5 78 203.0 79 183.0 80 163.0 81 115.0 82 67.0 83 46.5 84 26.0 85 36.5 86 47.0 87 24.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 682141.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.785578314217812 #Duplication Level Percentage of deduplicated Percentage of total 1 73.75768049103746 21.231574880498144 2 10.558152719493151 6.078450639208838 3 3.7526510426443047 3.240666914219063 4 1.87585601273021 2.1599040064256734 5 1.1117029420958973 1.6000506050923902 6 0.8193227096560337 1.4150806814052543 7 0.6469086072692136 1.3035146863682667 8 0.5458311186658651 1.2569651530154702 9 0.511248401020852 1.3244922797043934 >10 6.262554931429038 33.47538180649469 >50 0.09092817064249938 1.8106300124972718 >100 0.054246919985572004 3.1065503351991977 >500 0.003616461332371467 0.7016470142883725 >1k 0.005683010665155162 4.128385145537351 >5k 0.0015499119995877714 3.2412879771969223 >10k+ 0.0020665493327836956 13.925417862848736 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGC 34467 5.0527676829277235 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCG 28009 4.106042592367267 No Hit GAATCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTC 20669 3.030018720469815 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAACCGATT 10492 1.5380984283307997 No Hit GCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC 9504 1.3932603376721235 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAACCGATTCGTA 6600 0.967541901161197 No Hit GAACTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCT 5691 0.8342849938649046 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTC 4952 0.7259496203864011 No Hit GAATGACTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCT 4667 0.6841694019271675 No Hit CTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGCT 2792 0.4092995436427366 No Hit CCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC 2766 0.4054880149411925 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAACCGATTCGT 2280 0.334241747673868 No Hit TCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC 2216 0.32485952317775946 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATG 1997 0.2927547237301379 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1913 0.2804405540789954 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTAT 1500 0.21989588662754475 No Hit GAATGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTT 1432 0.20992727310042936 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCAACCGAT 1245 0.18251358590086214 No Hit TGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGCTT 968 0.1419061455036422 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTG 925 0.13560246342031926 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4647133070728779 0.0 2 0.0 0.0 0.0 2.7731803248888425 0.0 3 0.0 0.0 0.0 3.369098177649489 0.0 4 0.0 0.0 0.0 5.053940460989737 0.0 5 0.0 0.0 0.0 9.502434247464967 0.0 6 0.0 0.0 0.0 10.293473050293121 0.0 7 0.0 0.0 0.0 11.61885885762621 0.0 8 0.0 0.0 0.0 13.242423487226247 0.0 9 0.0 0.0 0.0 13.62372295463841 0.0 10 0.0 0.0 0.0 18.837601023835248 0.0 11 0.0 0.0 0.0 20.382149731507123 0.0 12 1.465972577516965E-4 0.0 0.0 27.12972831130221 0.0 13 1.465972577516965E-4 0.0 0.0 27.859636057647904 0.0 14 1.465972577516965E-4 0.0 0.0 28.240642330544564 0.0 15 1.465972577516965E-4 0.0 0.0 29.55884487224782 0.0 16 1.465972577516965E-4 0.0 0.0 30.42391529024058 0.0 17 1.465972577516965E-4 0.0 0.0 31.197802213911785 0.0 18 1.465972577516965E-4 0.0 0.0 31.914662804317583 0.0 19 1.465972577516965E-4 0.0 0.0 34.25479482980791 0.0 20 1.465972577516965E-4 0.0 0.0 35.058440996802716 0.0 21 1.465972577516965E-4 0.0 0.0 35.84537507641382 0.0 22 1.465972577516965E-4 0.0 0.0 36.71718896826316 0.0 23 1.465972577516965E-4 0.0 0.0 37.481547070180504 0.0 24 1.465972577516965E-4 0.0 0.0 38.10238645675894 0.0 25 1.465972577516965E-4 0.0 0.0 38.68012624955838 0.0 26 1.465972577516965E-4 0.0 0.0 39.20127950086566 0.0 27 1.465972577516965E-4 0.0 0.0 39.70747983188227 0.0 28 1.465972577516965E-4 0.0 0.0 40.2032717575985 0.0 29 1.465972577516965E-4 0.0 0.0 40.68543013834383 0.0 30 1.465972577516965E-4 0.0 0.0 41.24645784375957 0.0 31 1.465972577516965E-4 0.0 0.0 41.75573671718897 0.0 32 1.465972577516965E-4 0.0 0.0 42.260177881112554 0.0 33 1.465972577516965E-4 0.0 0.0 42.75728918214856 0.0 34 1.465972577516965E-4 0.0 0.0 43.25674603930859 0.0 35 1.465972577516965E-4 0.0 0.0 43.732747335228346 0.0 36 1.465972577516965E-4 0.0 0.0 44.251701627669355 0.0 37 1.465972577516965E-4 0.0 0.0 44.759074736747976 0.0 38 1.465972577516965E-4 0.0 0.0 45.24724360506112 0.0 39 1.465972577516965E-4 0.0 0.0 45.742742336261855 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGACGG 20 7.0312666E-4 45.000004 2 CCCTCGA 40 6.8084773E-9 45.000004 41 TGCGACG 20 7.0312666E-4 45.000004 1 GCCCTCG 20 7.0312666E-4 45.000004 13 GCGATAC 40 6.8084773E-9 45.000004 33 CCCGGTT 20 7.0312666E-4 45.000004 28 ACCGTAT 25 3.8891318E-5 45.0 12 TACGGCT 3945 0.0 44.14449 7 ACCGGTG 190 0.0 43.81579 17 ACGGCTG 3985 0.0 43.757843 8 TGATACC 3030 0.0 43.73762 4 GATACCT 3075 0.0 43.243904 5 GGCGACT 870 0.0 42.672417 10 CCGGTGA 185 0.0 42.567566 18 CGGCTGT 4195 0.0 42.42551 9 CGTTTTT 1215 0.0 41.666664 1 TTCGGGC 200 0.0 41.625 4 GAATGAC 650 0.0 41.538464 1 GCGACTG 895 0.0 41.480446 11 CTTTTCG 60 3.6379788E-12 41.249996 1 >>END_MODULE