##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933841.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1014591 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.34978134046133 28.0 16.0 31.0 16.0 34.0 2 26.412721973682007 30.0 16.0 33.0 16.0 34.0 3 27.472273063727158 31.0 25.0 33.0 16.0 34.0 4 31.53929514454593 35.0 28.0 35.0 19.0 37.0 5 33.35924426690164 35.0 32.0 35.0 28.0 37.0 6 31.84327970581249 35.0 30.0 37.0 17.0 37.0 7 33.14688381820852 35.0 32.0 35.0 28.0 37.0 8 32.44817665443514 35.0 32.0 37.0 25.0 37.0 9 34.247925518755835 35.0 32.0 38.0 28.0 39.0 10 32.89276072821462 34.0 31.0 37.0 27.0 39.0 11 33.243049662376265 35.0 32.0 37.0 26.0 39.0 12 33.42147722579838 35.0 31.0 38.0 24.0 39.0 13 33.45707777813917 35.0 32.0 37.0 25.0 39.0 14 33.728269815127476 36.0 32.0 38.0 23.0 40.0 15 34.26783699047202 36.0 32.0 39.0 25.0 40.0 16 34.16241618543827 36.0 32.0 38.0 27.0 40.0 17 33.636484061065 35.0 32.0 38.0 25.0 40.0 18 34.07539885530228 36.0 32.0 38.0 27.0 40.0 19 33.863135982873885 35.0 32.0 39.0 25.0 40.0 20 33.65748956968867 35.0 31.0 38.0 25.0 40.0 21 33.26623733110189 35.0 31.0 39.0 23.0 40.0 22 34.343843972595856 36.0 32.0 39.0 26.0 40.0 23 35.05986254559719 37.0 33.0 39.0 29.0 40.0 24 35.323262280071475 37.0 34.0 39.0 29.0 40.0 25 33.522631286892945 35.0 32.0 39.0 24.0 40.0 26 34.240990704628764 36.0 32.0 39.0 27.0 40.0 27 34.505391827839986 36.0 33.0 39.0 27.0 40.0 28 34.59096325514419 36.0 33.0 39.0 27.0 40.0 29 35.02944733395033 37.0 34.0 39.0 27.0 40.0 30 32.95169580648754 35.0 31.0 38.0 23.0 40.0 31 33.79147557981492 35.0 31.0 39.0 25.0 40.0 32 33.9176623880953 36.0 32.0 38.0 25.0 40.0 33 34.484690875436506 36.0 33.0 39.0 26.0 40.0 34 34.70415862155292 37.0 34.0 39.0 25.0 40.0 35 34.77683815448787 37.0 34.0 40.0 26.0 40.0 36 34.94053564441238 37.0 34.0 40.0 27.0 40.0 37 35.05881680401265 37.0 34.0 40.0 27.0 41.0 38 34.87137674195809 37.0 34.0 40.0 27.0 40.0 39 34.916130736424826 37.0 34.0 40.0 28.0 40.0 40 34.314044772721225 36.0 33.0 39.0 25.0 40.0 41 33.69339369263082 35.0 32.0 39.0 23.0 40.0 42 34.753983624928665 37.0 33.0 39.0 27.0 40.0 43 35.07248536602434 37.0 34.0 40.0 29.0 40.0 44 35.60016499259307 38.0 35.0 40.0 30.0 40.0 45 35.90891206407311 38.0 35.0 40.0 31.0 41.0 46 35.67228075155408 38.0 35.0 40.0 30.0 41.0 47 35.31496238385714 37.0 34.0 40.0 29.0 41.0 48 35.47270772163365 37.0 34.0 40.0 30.0 41.0 49 35.780472131134616 38.0 35.0 40.0 31.0 41.0 50 35.512501096500955 37.0 34.0 40.0 29.0 41.0 51 35.02762985281754 37.0 34.0 40.0 28.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 9.0 10 17.0 11 19.0 12 26.0 13 25.0 14 62.0 15 83.0 16 202.0 17 451.0 18 1117.0 19 2424.0 20 4068.0 21 5441.0 22 6283.0 23 6880.0 24 7971.0 25 10798.0 26 14585.0 27 19737.0 28 25654.0 29 34768.0 30 47134.0 31 64483.0 32 86705.0 33 105770.0 34 114886.0 35 130561.0 36 134536.0 37 118812.0 38 64463.0 39 6617.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.82968112273813 3.391415851313485 39.98103669360363 12.797866332344757 2 17.072199536562024 27.71698152260369 37.717267352066 17.493551588768284 3 16.297108884269623 27.95993656557174 39.27819190195853 16.46476264820011 4 16.454709336077297 3.2817164749145222 60.49994529815462 19.763628890853553 5 34.155142318431764 4.13467101521697 39.44584566588901 22.264341000462256 6 17.619217990303483 24.09286106421208 42.73741832915924 15.550502616325199 7 62.47975785316447 1.6525871016005464 31.041276731214847 4.826378314020132 8 59.68602126374076 19.683399517638144 12.462065995065991 8.168513223555108 9 55.90528597237705 3.5431025901077375 13.016772275724897 27.53483916179032 10 47.17585706949894 16.950475610369104 20.038616545977643 15.835050774154313 11 39.23837290100149 17.28952848980525 25.66393748811097 17.80816112108229 12 30.05792481896646 13.56793032857575 29.12099555387343 27.253149298584354 13 28.640210685882288 16.419029934229656 38.88325443454554 16.057504945342508 14 21.226878614141068 24.569210647443157 30.38396752977308 23.819943208642695 15 15.174489030555169 19.105629756226893 45.24059448585686 20.479286727361075 16 22.305145620254862 21.397292110811154 23.756272231864862 32.541290037069125 17 21.12723254986492 25.27580079066343 33.48472438647691 20.112242272994735 18 20.9851063137757 21.593331697206068 31.69109522950627 25.730466759511962 19 19.81074147119381 26.78448754227073 27.155770157630023 26.249000828905437 20 19.926551684373308 28.708218385536632 37.679419588780114 13.685810341309946 21 21.549767344673864 33.180463851936395 29.054761968123117 16.215006835266625 22 16.02566945695359 19.597650678943534 39.049922579640466 25.32675728446241 23 19.8667246210542 28.512375922908838 32.10209828393904 19.51880117209792 24 24.07482423952115 23.046725232137877 24.65702928569246 28.221421242648514 25 18.459950857044856 33.64813998941445 21.28857835324776 26.603330800292923 26 15.791584983505668 19.795661503009587 31.215829826994323 33.19692368649042 27 19.759883539278388 27.026752652053883 26.952338429968332 26.261025378699397 28 12.005724474196992 26.110422820624272 33.898191487998616 27.985661217180123 29 20.766101808512 25.062611436529597 24.125485047669454 30.04580170728895 30 19.135099759410444 33.020497914923354 28.9204221208349 18.923980204831306 31 22.7212738926326 20.831054089776078 27.711166371473826 28.7365056461175 32 26.159506638635666 32.99763155793812 19.604944258326753 21.237917545099457 33 20.812228770016684 23.98345737346379 21.491517271491663 33.71279658502786 34 20.630776342388213 20.746685117451268 27.059278073627695 31.56326046653282 35 14.734804468007306 30.431868605181794 22.22540905645723 32.60791787035367 36 16.82530201825169 25.906301159777684 24.288703526839882 32.979693295130744 37 15.545278836496676 34.37503388064747 27.73748239438355 22.3422048884723 38 19.46232521281975 28.54302866869507 25.973224678712896 26.021421439772286 39 19.401808216315736 29.327581261808945 22.72738472941313 28.543225792462184 40 18.19067979116708 26.641671372996605 24.72395280462768 30.443696031208635 41 16.44505027148871 22.490441961342057 20.814692817105612 40.24981495006362 42 15.40926343718799 18.927331308872244 31.642799906563333 34.02060534737643 43 19.054574700544357 18.87992304288132 24.000607141202714 38.06489511537161 44 20.302072460725554 20.413841636679216 29.484294656664606 29.799791245930624 45 17.67224428365716 16.421592543202138 28.409871564009535 37.49629160913116 46 25.423840739766074 25.160779072552387 24.426098792518363 24.989281395163175 47 11.812444620541676 21.908828286472083 42.105439531791625 24.17328756119461 48 18.578126555429726 25.86667928258776 25.78004338694114 29.77515077504137 49 19.36760724272145 16.943182030985884 36.99027489894943 26.698935827343234 50 21.539516908783934 18.108282056513413 27.451652932068193 32.90054810263446 51 17.74626425820848 18.41658362827977 25.903541427038085 37.93361068647366 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 146.0 1 442.5 2 739.0 3 3490.0 4 6241.0 5 4130.5 6 2020.0 7 1961.0 8 1902.0 9 2000.0 10 2098.0 11 2156.5 12 2215.0 13 2144.0 14 2073.0 15 1995.0 16 1917.0 17 1904.0 18 1891.0 19 2005.5 20 2120.0 21 2253.5 22 2387.0 23 2731.0 24 3075.0 25 3250.5 26 4223.0 27 5020.0 28 6020.5 29 7021.0 30 8194.0 31 9367.0 32 10681.0 33 11995.0 34 13772.5 35 15550.0 36 16637.0 37 17724.0 38 18981.5 39 20239.0 40 22858.5 41 25478.0 42 29009.5 43 32541.0 44 39879.0 45 47217.0 46 147138.5 47 247060.0 48 187461.5 49 127863.0 50 118867.0 51 109871.0 52 89172.0 53 68473.0 54 62564.5 55 56656.0 56 52736.5 57 48817.0 58 45847.5 59 42878.0 60 37438.0 61 31998.0 62 27466.5 63 22935.0 64 18539.0 65 14143.0 66 11072.0 67 8001.0 68 6337.5 69 4674.0 70 3776.5 71 2879.0 72 2307.0 73 1735.0 74 1368.5 75 849.0 76 696.0 77 508.0 78 320.0 79 237.0 80 154.0 81 85.5 82 17.0 83 16.0 84 15.0 85 8.5 86 2.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1014591.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.269328502451796 #Duplication Level Percentage of deduplicated Percentage of total 1 73.60661885378012 21.54416307186052 2 10.853312212551314 6.353383209776727 3 4.0188958440942555 3.5289114803379915 4 1.9954008734092907 2.3361617463158306 5 1.2911313361906362 1.889527360938663 6 0.8947402725388292 1.5713068176787346 7 0.718251409768238 1.471591552189897 8 0.649084284611775 1.5198608921664767 9 0.5573775364614074 1.4682659593118612 >10 5.209183578795374 26.1744011545183 >50 0.11615472029489451 2.3543410968634975 >100 0.07481729267434337 4.307208736191489 >500 0.007174260941374847 1.4109045912399178 >1k 0.004782840627583232 3.663752248265811 >5k 6.832629467976045E-4 1.6397891135183145 >10k+ 0.002391420313791616 18.766430968825944 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGC 55308 5.451260655771636 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCG 45292 4.464064830064529 No Hit GAATCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTC 34942 3.4439493352493766 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATAACCCT 16527 1.6289322495468617 No Hit GCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 14323 1.4117018581871907 TruSeq Adapter, Index 13 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCATAACCCTCGTA 10862 1.0705791791963462 No Hit GAACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCT 10423 1.0273105123148145 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTC 8638 0.8513775501655347 No Hit GAATGACTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCT 7761 0.7649387782860286 No Hit CTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCT 4569 0.4503292459720222 TruSeq Adapter, Index 16 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 3867 0.38113880371499453 TruSeq Adapter, Index 13 (95% over 23bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCATAACCCTCGT 3808 0.37532365258513034 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3497 0.3446709067988973 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATG 3366 0.33175930005292775 No Hit TCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGC 3131 0.30859725741702815 TruSeq Adapter, Index 13 (95% over 23bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTAT 2447 0.2411809290640268 No Hit GAATGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTT 2088 0.20579721286705677 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCATAACCC 2035 0.20057343303853475 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 2009 0.19801082406605222 No Hit TGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTGCTT 1780 0.17544015273149477 TruSeq Adapter, Index 13 (96% over 25bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 1626 0.16026162266371374 No Hit CGCTGTCTCTTATACACATCTGACGCCATAACCCTCGTATGCCGTCTTCTG 1408 0.13877513204828348 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5174498886743525 0.0 2 0.0 0.0 0.0 2.931033293218647 0.0 3 0.0 0.0 0.0 3.5759236973322257 0.0 4 0.0 0.0 0.0 5.491276780495786 0.0 5 0.0 0.0 0.0 10.523846554917203 0.0 6 0.0 0.0 0.0 11.41188912576595 0.0 7 0.0 0.0 0.0 12.969561133501086 0.0 8 0.0 0.0 0.0 14.857908260570023 0.0 9 0.0 0.0 0.0 15.37486533982659 0.0 10 0.0 0.0 0.0 21.12141739873506 0.0 11 0.0 0.0 0.0 22.946192110909717 0.0 12 0.0 0.0 0.0 30.347401070973426 0.0 13 0.0 0.0 0.0 31.188626747132588 0.0 14 0.0 0.0 0.0 31.644968268001588 0.0 15 0.0 0.0 0.0 33.13699806128775 0.0 16 0.0 0.0 0.0 34.01774705275328 0.0 17 0.0 0.0 0.0 34.867153365247674 0.0 18 0.0 0.0 0.0 35.533136012442455 0.0 19 0.0 0.0 0.0 38.09052120509644 0.0 20 0.0 0.0 0.0 38.9998531427935 0.0 21 0.0 0.0 0.0 39.851822064260375 0.0 22 0.0 0.0 0.0 40.848578392672515 0.0 23 0.0 0.0 0.0 41.62120499787599 0.0 24 0.0 0.0 0.0 42.251803928873805 0.0 25 0.0 0.0 0.0 42.82977081405217 0.0 26 0.0 0.0 0.0 43.35628839601376 0.0 27 9.856188355701953E-5 0.0 0.0 44.02039836742096 0.0 28 1.9712376711403907E-4 0.0 0.0 44.56248872698457 0.0 29 1.9712376711403907E-4 0.0 0.0 45.21063167325553 0.0 30 1.9712376711403907E-4 0.0 0.0 45.96689700578854 0.0 31 1.9712376711403907E-4 0.0 0.0 46.500412481482684 0.0 32 2.956856506710586E-4 0.0 0.0 47.02062210289664 0.0 33 2.956856506710586E-4 0.0 0.0 47.587155809582384 0.0 34 2.956856506710586E-4 0.0 0.0 48.189368918115775 0.0 35 2.956856506710586E-4 0.0 0.0 48.827261428496804 0.0 36 2.956856506710586E-4 0.0 0.0 49.343824260219144 0.0 37 2.956856506710586E-4 0.0 0.0 49.91163927139113 0.0 38 2.956856506710586E-4 0.0 0.0 50.67943634430031 0.0 39 2.956856506710586E-4 0.0 0.0 52.22932196323445 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTA 20 7.0328964E-4 45.0 25 CGCGAAC 20 7.0328964E-4 45.0 32 CCCCGTT 20 7.0328964E-4 45.0 16 TGCGATC 20 7.0328964E-4 45.0 32 ATTTCGG 25 3.8904815E-5 45.0 2 TACCGGG 70 0.0 45.0 3 GATACGC 60 0.0 44.999996 5 GCGCGAC 30 2.1652486E-6 44.999996 9 TACGGCT 6590 0.0 44.009865 7 ACCGGTG 195 0.0 43.846153 17 ACGGCTG 6635 0.0 43.677467 8 GATACCT 4730 0.0 43.477802 5 TGATACC 4755 0.0 43.059933 4 GGCGACT 1230 0.0 42.80488 10 CGGCTGT 6915 0.0 42.624733 9 AGGCACG 90 0.0 42.5 10 GCGACTG 1230 0.0 42.256096 11 CGTTTGG 560 0.0 42.1875 2 CGTTTTT 1910 0.0 41.937172 1 AAGGCGA 70 0.0 41.785713 30 >>END_MODULE