##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933834.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1093967 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.692414853464502 30.0 16.0 33.0 16.0 34.0 2 26.726573105038817 31.0 16.0 33.0 16.0 34.0 3 27.794149183659105 31.0 25.0 34.0 16.0 34.0 4 31.68293650539733 35.0 28.0 35.0 19.0 37.0 5 33.39119187324663 35.0 33.0 37.0 28.0 37.0 6 32.07963951380618 35.0 32.0 37.0 17.0 37.0 7 33.10666500909077 35.0 32.0 35.0 28.0 37.0 8 32.55913478194498 35.0 32.0 37.0 25.0 37.0 9 34.28211362865608 35.0 32.0 39.0 28.0 39.0 10 33.323711775583725 35.0 31.0 37.0 27.0 39.0 11 33.85583477380945 35.0 32.0 39.0 27.0 39.0 12 34.05710409911816 35.0 32.0 39.0 26.0 39.0 13 34.22590352359806 35.0 33.0 38.0 27.0 39.0 14 34.24495345837671 36.0 32.0 39.0 25.0 40.0 15 34.719834327726524 36.0 32.0 39.0 27.0 40.0 16 34.648277324635934 36.0 32.0 39.0 27.0 40.0 17 34.07814678139286 36.0 32.0 38.0 26.0 40.0 18 34.37182840067388 36.0 32.0 39.0 27.0 40.0 19 34.17744136706135 36.0 32.0 39.0 27.0 40.0 20 34.065643662011745 36.0 32.0 39.0 25.0 40.0 21 33.83825746114828 36.0 32.0 39.0 25.0 40.0 22 34.81870294076512 37.0 33.0 39.0 27.0 40.0 23 35.42913725916778 37.0 34.0 39.0 29.0 40.0 24 35.71754358221043 38.0 34.0 39.0 30.0 40.0 25 33.72771847779686 36.0 32.0 39.0 24.0 40.0 26 34.60170645001175 37.0 33.0 39.0 27.0 40.0 27 34.87773762828312 37.0 33.0 39.0 27.0 40.0 28 35.02544135243568 37.0 33.0 39.0 27.0 40.0 29 35.431186681133894 38.0 34.0 40.0 27.0 40.0 30 32.98018404577103 36.0 30.0 39.0 21.0 40.0 31 34.10335503721776 36.0 32.0 39.0 25.0 40.0 32 34.490979161163 37.0 33.0 39.0 26.0 40.0 33 34.9309083363575 37.0 33.0 39.0 26.0 40.0 34 35.09783841742941 38.0 34.0 40.0 27.0 40.0 35 35.24741148498995 38.0 34.0 40.0 27.0 41.0 36 35.2879026515425 38.0 34.0 40.0 27.0 41.0 37 35.308204909288854 38.0 34.0 40.0 27.0 41.0 38 35.026593123924215 37.0 34.0 40.0 27.0 41.0 39 34.96993876414919 37.0 34.0 40.0 27.0 41.0 40 34.48782275882179 37.0 33.0 40.0 25.0 41.0 41 33.81427319105604 37.0 32.0 39.0 23.0 40.0 42 34.902105822204874 37.0 34.0 40.0 27.0 41.0 43 35.05786737625541 37.0 34.0 40.0 27.0 41.0 44 35.61251390581251 38.0 35.0 40.0 29.0 41.0 45 35.913577831872445 38.0 35.0 40.0 30.0 41.0 46 35.54367910549404 38.0 35.0 40.0 29.0 41.0 47 35.092869346150295 37.0 34.0 40.0 26.0 41.0 48 35.26301067582477 37.0 34.0 40.0 28.0 41.0 49 35.511693679973895 38.0 34.0 40.0 29.0 41.0 50 35.24405855021221 37.0 34.0 40.0 28.0 41.0 51 34.739161236125035 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 6.0 10 15.0 11 23.0 12 24.0 13 29.0 14 62.0 15 119.0 16 312.0 17 940.0 18 2057.0 19 3727.0 20 5529.0 21 6839.0 22 7297.0 23 7675.0 24 9122.0 25 11447.0 26 14894.0 27 19436.0 28 24837.0 29 33154.0 30 45159.0 31 61104.0 32 79768.0 33 99312.0 34 115318.0 35 136829.0 36 151455.0 37 150861.0 38 95209.0 39 11404.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.673103484840034 3.3427882193887015 40.34061356512582 14.64349473064544 2 15.98311466433631 26.321909161793727 40.36502015143053 17.329956022439433 3 15.98558274609746 26.324194422683682 41.992674367691166 15.697548463527694 4 15.50906014532431 3.3053099407934603 61.324518929730054 19.861110984152173 5 32.8758545733098 4.188151927800381 41.31221508509854 21.623778413791275 6 17.8451452374706 22.615490229595594 44.057087645239754 15.482276887694052 7 65.57464713286598 1.6532491382281183 28.757631628742004 4.014472100163899 8 63.38646412551749 18.63264614014865 11.19494463726968 6.785945097064171 9 59.730595164205134 3.803862456545764 11.265422083115853 25.20012029613325 10 41.875029137076346 24.48401094365735 18.209415823329223 15.431544095937081 11 34.45661523610858 19.178092209362806 27.660249349386223 18.705043205142385 12 25.42224765463675 16.517134429100693 29.336076865207083 28.724541051055468 13 26.589376096353913 18.380079106590966 38.44759485432376 16.58294994273136 14 20.237813389252143 27.4243190151074 28.415756599604926 23.922110996035528 15 13.856816521887772 21.50494484751368 42.01708095399587 22.621157676602678 16 18.369749727368376 23.913975467267296 25.181929619449217 32.534345185915114 17 19.99914074190538 26.70537593912796 32.761134476634126 20.53434884233254 18 18.565185238677216 23.194666749545462 30.95440721703671 27.285740794740608 19 18.61893457480893 25.88908074923649 28.295186235050966 27.196798440903606 20 20.47164128351221 26.4222778200805 37.552412458511085 15.553668437896206 21 21.665735803730826 31.825822899593863 29.158100747097492 17.35034054957782 22 18.4179230269286 19.487607944298137 36.9840223699618 25.110446658811465 23 20.269258579097908 29.152707531397198 31.12104844113214 19.45698544837276 24 21.64471140354325 24.247349325893744 26.299147963329787 27.808791307233214 25 17.641665607829122 35.177386520799985 23.274193828515852 23.90675404285504 26 19.285042419012637 21.95148482541064 30.46901780401054 28.294454951566177 27 22.05642400547731 27.683924652206144 25.91897196167709 24.34067938063945 28 16.98945214983633 26.333244055807896 32.599246595189804 24.078057199165972 29 24.60055924904499 22.177360011773665 26.20563508771288 27.016445651468462 30 19.924732647328483 33.003189310098016 28.27324773050741 18.798830312066087 31 27.172757496341298 22.57508681706121 23.50290273838242 26.749252948215073 32 25.863211595962216 29.215506500653127 22.78441671458097 22.136865188803682 33 20.98244279763466 25.91184194770043 22.053407461102577 31.052307793562328 34 27.813179008141926 25.58623797609983 25.676734307342 20.92384870841625 35 18.453664507247478 27.53995321613906 27.235830696904017 26.770551579709444 36 29.166693328043714 25.67444904645204 21.530539769481162 23.628317856023077 37 17.840026253077106 29.296496146593086 28.303138942948003 24.560338657381802 38 26.364872066524857 26.393117891124685 22.08576675530432 25.156243287046138 39 21.11160574313485 27.478068351239116 24.114804194276427 27.295521711349615 40 19.47508471462119 28.104595476828827 30.822410548032984 21.597909260517 41 19.23558937335404 29.98664493535911 22.911111578320003 27.86665411296684 42 18.60805673297275 19.929120348237195 37.43211632526393 24.03070659352613 43 23.18872507123158 20.848983561661367 23.88847195573541 32.07381941137164 44 21.60229696142571 22.920344032315416 29.892035134515027 25.58532387174385 45 21.274773370677543 18.82515651751835 27.70467482108693 32.19539529071718 46 27.397170115734752 24.28345644795501 24.889233404663944 23.430140031646292 47 15.1738580779859 23.57959609384927 39.8725007244277 21.37404510373713 48 20.824485564921062 28.34875275031148 25.317582705876866 25.50917897889059 49 20.086986170515196 19.3758129815616 37.52773164089959 23.00946920702361 50 23.126200333282448 20.280867704418874 28.394183736803765 28.198748225494917 51 20.036619020500616 20.27538307828298 26.666800735305547 33.021197165910856 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 115.0 1 442.5 2 770.0 3 4232.0 4 7694.0 5 5273.0 6 2852.0 7 2791.5 8 2731.0 9 2809.5 10 2888.0 11 2838.5 12 2789.0 13 2691.0 14 2593.0 15 2420.0 16 2247.0 17 2232.5 18 2218.0 19 2262.5 20 2307.0 21 2600.5 22 2894.0 23 3427.5 24 3961.0 25 4850.0 26 6802.5 27 7866.0 28 9687.5 29 11509.0 30 12908.0 31 14307.0 32 16598.5 33 18890.0 34 21220.5 35 23551.0 36 25606.0 37 27661.0 38 29848.0 39 32035.0 40 34234.0 41 36433.0 42 39871.5 43 43310.0 44 49348.5 45 55387.0 46 150421.0 47 245455.0 48 184557.5 49 123660.0 50 113577.5 51 103495.0 52 86163.5 53 68832.0 54 62459.0 55 56086.0 56 52445.0 57 48804.0 58 44722.5 59 40641.0 60 35722.5 61 30804.0 62 26281.0 63 21758.0 64 18176.5 65 14595.0 66 12169.5 67 9744.0 68 8416.5 69 7089.0 70 5940.0 71 4791.0 72 3720.5 73 2650.0 74 2044.5 75 1077.5 76 716.0 77 533.0 78 350.0 79 257.0 80 164.0 81 132.5 82 101.0 83 57.5 84 14.0 85 22.0 86 30.0 87 16.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1093967.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.337762404958116 #Duplication Level Percentage of deduplicated Percentage of total 1 74.27112406467299 21.046774672938703 2 9.80026690928467 5.554352703609645 3 3.4732689363898657 2.952740096638128 4 1.7342094342886194 1.965744596372309 5 1.153701197579925 1.6346655211667775 6 0.8223537369437137 1.3982198886204231 7 0.7113522857911921 1.4110692442682267 8 0.6317725943437719 1.4322417337982234 9 0.5798057939902198 1.4787358948001648 >10 6.672620153730965 34.475975103597214 >50 0.08670483160326506 1.6656745084646478 >100 0.05005973641283191 2.8819444855051217 >500 0.005235005115063855 1.0214709776018687 >1k 0.004580629475680873 3.012027428371998 >5k 6.543756393829819E-4 1.3504334019035324 >10k+ 0.0022903147378404366 16.717929742343006 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC 53666 4.905632436810251 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCG 42924 3.923701537614937 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTC 34868 3.1872990684362508 RNA PCR Primer, Index 4 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCAATCT 15931 1.4562596495141078 No Hit GCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 11315 1.0343090787930533 RNA PCR Primer, Index 48 (96% over 25bp) GAACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCT 11125 1.016941096029405 TruSeq Adapter, Index 4 (95% over 24bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTA 10481 0.9580727755041971 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTC 8010 0.7321975891411715 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCT 6555 0.599195405345865 TruSeq Adapter, Index 4 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4381 0.4004691183554897 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGCAATCTCGT 3747 0.3425149021862634 No Hit CTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGCT 3468 0.3170113906543799 TruSeq Adapter, Index 4 (96% over 27bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATG 3438 0.3142690775864354 No Hit CCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 3379 0.30887586188614463 RNA PCR Primer, Index 4 (96% over 26bp) GAATGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTT 2300 0.21024400187574216 TruSeq Adapter, Index 4 (95% over 22bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTAT 2266 0.2071360470654051 No Hit TCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGC 1937 0.17706201375361413 RNA PCR Primer, Index 48 (96% over 25bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGAGCAATC 1727 0.1578658222780029 No Hit CGCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTG 1406 0.12852307245099717 TruSeq Adapter, Index 4 (96% over 25bp) TGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGCTT 1206 0.1102409853313674 RNA PCR Primer, Index 48 (96% over 27bp) GAATCTGTCTCTTATACACATCTGACGCGCGCAATCTCGTATGCCGTCTTC 1131 0.10338520266150623 RNA PCR Primer, Index 32 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3918765374092637 0.0 2 0.0 0.0 0.0 2.1669757862897145 0.0 3 9.141043559814876E-5 0.0 0.0 2.599529967540154 0.0 4 9.141043559814876E-5 0.0 0.0 4.229926496868735 0.0 5 9.141043559814876E-5 0.0 0.0 8.617718816015474 0.0 6 9.141043559814876E-5 0.0 0.0 9.28995115940426 0.0 7 9.141043559814876E-5 0.0 0.0 10.43258160438112 0.0 8 9.141043559814876E-5 0.0 0.0 11.8902124104292 0.0 9 9.141043559814876E-5 0.0 0.0 12.25164927278428 0.0 10 9.141043559814876E-5 0.0 0.0 17.12620216149116 0.0 11 9.141043559814876E-5 0.0 0.0 18.330900292239164 0.0 12 9.141043559814876E-5 0.0 0.0 24.903310611746058 0.0 13 9.141043559814876E-5 0.0 0.0 25.6072623762874 0.0 14 9.141043559814876E-5 0.0 0.0 25.96138640379463 0.0 15 9.141043559814876E-5 0.0 0.0 27.252741627489677 0.0 16 9.141043559814876E-5 0.0 0.0 27.987315887956402 0.0 17 9.141043559814876E-5 0.0 0.0 28.595012463812893 0.0 18 9.141043559814876E-5 0.0 0.0 29.118245797176698 0.0 19 9.141043559814876E-5 0.0 0.0 31.260357944983717 0.0 20 9.141043559814876E-5 0.0 0.0 31.933961444906473 0.0 21 9.141043559814876E-5 0.0 0.0 32.627858061532024 0.0 22 9.141043559814876E-5 0.0 0.0 33.44433607229468 0.0 23 9.141043559814876E-5 0.0 0.0 34.065835623926496 0.0 24 9.141043559814876E-5 0.0 0.0 34.590988576437866 0.0 25 9.141043559814876E-5 0.0 0.0 35.06129526759034 0.0 26 9.141043559814876E-5 0.0 0.0 35.554820209384744 0.0 27 9.141043559814876E-5 0.0 0.0 36.07247750617706 0.0 28 9.141043559814876E-5 0.0 0.0 36.49141153252338 0.0 29 9.141043559814876E-5 0.0 0.0 36.963455021952214 0.0 30 9.141043559814876E-5 0.0 0.0 37.552778100253484 0.0 31 9.141043559814876E-5 0.0 0.0 38.00206039121838 0.0 32 1.8282087119629752E-4 0.0 0.0 38.42026313407991 0.0 33 1.8282087119629752E-4 0.0 0.0 38.854188471864326 0.0 34 1.8282087119629752E-4 0.0 0.0 39.327146065649146 0.0 35 1.8282087119629752E-4 0.0 0.0 39.83228013276452 0.0 36 1.8282087119629752E-4 0.0 0.0 40.28777833335009 0.0 37 1.8282087119629752E-4 0.0 0.0 40.74501333221203 0.0 38 1.8282087119629752E-4 0.0 0.0 41.29109927447537 0.0 39 1.8282087119629752E-4 0.0 0.0 42.31407345925425 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCGTA 20 7.033138E-4 45.0 9 CCTAGCG 20 7.033138E-4 45.0 45 TATGCGA 20 7.033138E-4 45.0 30 TACGGCT 6280 0.0 43.63854 7 ACGGCTG 6295 0.0 43.570293 8 TGATACC 5115 0.0 43.548386 4 TTATACG 140 0.0 43.392857 26 TATACGG 135 0.0 43.333332 27 GATACCT 5170 0.0 43.215668 5 CGGCTGT 6660 0.0 41.85811 9 CGTTTTT 2520 0.0 41.69643 1 AATGATC 1235 0.0 41.538464 2 CACCGGT 360 0.0 41.25 16 ATACCTG 5450 0.0 41.160553 6 GAATCTG 4145 0.0 40.603138 1 GCGACTG 1300 0.0 40.326923 11 ATGATAC 20490 0.0 40.32211 3 AATGATA 20530 0.0 39.892838 2 GAATGAT 21320 0.0 39.797134 1 ACCACCT 2275 0.0 39.659344 14 >>END_MODULE