FastQCFastQC Report
Sat 14 Jan 2017
SRR2933819.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933819.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences359742
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGC258677.190430919937066No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCG218966.08658427428546No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTC164054.5602125968054885No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTAGTCCT76062.1142930211095727No Hit
GCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC69431.9299942736739109TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTA45871.2750804743399438No Hit
GAACTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCT43591.2117017195656887No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTC38131.0599262805010259No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCT34820.9679158952805066No Hit
CTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGCT19850.5517843343284909TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC17930.4984127513606974TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGT16330.45393643222086943No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATG14400.4002868722584519No Hit
TCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGC14350.3988969872853323TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTAT10590.2943776373067365No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCAGTAGTCC9010.2504572721561564No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTT8600.23906021537657543No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8420.23405662947334477No Hit
TGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTGCTT8130.22599529662925094TruSeq Adapter, Index 22 (95% over 24bp)
CGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGCCGTCTTCTG6020.16734215076360281No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGC4980.1384325433227146No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATGAATGAT4500.1250896475807662No Hit
GAATGCTACGGCTGTCTCTTATACACATCTGACGCAGTAGTCCTCGTATGC4410.1225878546291509No Hit
GTGCTTGGGAGGCAGAGGCAGGCAGATTTCTGAGCTCGAGGTCAGCCTGGT4040.11230270582806567No Hit
GAATGATACGGCGACCCTGTCTCTTATACACATCTGACGCAGTAGTCCTCG3990.11091282085494605No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTG600.045.0000041
TACGGAG302.1613287E-645.00000429
GCGATAC302.1613287E-645.00000433
ACACGCG351.2088094E-745.036
CATATAA207.026817E-445.019
GGGTCTA207.026817E-445.08
GCGAACC253.8854447E-545.033
CGTTGAT207.026817E-445.025
TGGCGAA207.026817E-445.034
ATTAAGT207.026817E-445.028
TTCGTAC253.8854447E-545.033
CATTCTA253.8854447E-545.045
CCTAAGG207.026817E-445.032
TCGATGA207.026817E-445.019
ATACTAT253.8854447E-545.045
AGAGTTA253.8854447E-545.026
TACGCAG207.026817E-445.041
TCTACGC207.026817E-445.039
ACGGCCT1850.045.08
CTACGCA207.026817E-445.040