##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933817.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 802699 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.15194985916265 28.0 16.0 31.0 16.0 34.0 2 25.906349702690548 30.0 16.0 33.0 16.0 34.0 3 26.98249032327186 31.0 19.0 33.0 16.0 34.0 4 31.250945871366476 33.0 28.0 35.0 19.0 37.0 5 33.27074283137266 35.0 32.0 35.0 28.0 37.0 6 31.562458655112316 35.0 28.0 37.0 17.0 37.0 7 33.143960563050406 35.0 32.0 35.0 28.0 37.0 8 32.084788943302534 35.0 31.0 37.0 17.0 37.0 9 34.18965265934055 35.0 32.0 38.0 28.0 39.0 10 33.436583327000534 35.0 32.0 37.0 27.0 39.0 11 34.1828929648598 35.0 32.0 39.0 27.0 39.0 12 34.36673896441879 35.0 33.0 39.0 27.0 39.0 13 34.57649878721663 35.0 33.0 38.0 27.0 39.0 14 34.57697468166772 37.0 33.0 39.0 27.0 40.0 15 35.03766667206512 37.0 33.0 39.0 27.0 40.0 16 34.966935302024794 36.0 33.0 39.0 27.0 40.0 17 34.1521217791476 36.0 32.0 38.0 27.0 40.0 18 34.552278002090446 36.0 32.0 39.0 27.0 40.0 19 34.30635144680634 36.0 32.0 39.0 27.0 40.0 20 33.698245544095606 35.0 31.0 39.0 25.0 40.0 21 33.58165140357718 36.0 32.0 39.0 25.0 40.0 22 34.650450542482304 37.0 32.0 39.0 27.0 40.0 23 35.00234209834571 37.0 33.0 39.0 27.0 40.0 24 35.34146049764607 37.0 34.0 39.0 27.0 40.0 25 33.37342640267398 36.0 31.0 39.0 24.0 40.0 26 34.172560324604866 36.0 32.0 39.0 25.0 40.0 27 34.37446664316263 37.0 33.0 39.0 26.0 40.0 28 34.378096895598475 37.0 33.0 39.0 25.0 40.0 29 34.93708476028997 37.0 33.0 40.0 26.0 40.0 30 32.772406593256 36.0 30.0 39.0 19.0 40.0 31 33.845567267431505 36.0 31.0 39.0 25.0 40.0 32 34.00230223284195 36.0 33.0 39.0 25.0 40.0 33 34.356864777457055 37.0 33.0 39.0 24.0 40.0 34 34.65644282601573 38.0 34.0 40.0 24.0 40.0 35 34.50141086509389 38.0 34.0 40.0 23.0 41.0 36 34.5558409814887 38.0 34.0 40.0 23.0 41.0 37 34.47331814291534 38.0 34.0 40.0 23.0 41.0 38 34.272199168056765 37.0 33.0 40.0 23.0 41.0 39 34.09957655360228 37.0 33.0 40.0 23.0 41.0 40 34.192054555941894 37.0 33.0 40.0 23.0 41.0 41 33.486346687861825 37.0 32.0 39.0 21.0 40.0 42 34.29945346885943 37.0 33.0 40.0 23.0 40.0 43 34.491973952876485 38.0 34.0 40.0 23.0 40.0 44 34.99832066565425 38.0 35.0 40.0 24.0 41.0 45 35.15355319989187 38.0 35.0 40.0 25.0 41.0 46 34.82290248274882 38.0 35.0 40.0 24.0 41.0 47 34.33146173098509 37.0 33.0 40.0 23.0 41.0 48 34.71601683819215 37.0 34.0 40.0 24.0 41.0 49 35.10100299115858 38.0 34.0 40.0 26.0 41.0 50 34.780768382668974 38.0 34.0 40.0 24.0 41.0 51 34.38629050241747 37.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 2.0 10 12.0 11 12.0 12 17.0 13 26.0 14 34.0 15 71.0 16 303.0 17 925.0 18 2067.0 19 3928.0 20 6210.0 21 7937.0 22 8344.0 23 8171.0 24 8571.0 25 10548.0 26 13050.0 27 15522.0 28 18897.0 29 24296.0 30 31755.0 31 42402.0 32 56660.0 33 72029.0 34 87275.0 35 103085.0 36 108734.0 37 103140.0 38 61793.0 39 6881.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.809824105922644 2.8390467659732974 37.194764164400354 14.156364963703705 2 16.855134988333113 32.83322889401881 34.79486083824697 15.516775279401122 3 12.6629035292183 32.83023898123705 40.16748494765784 14.33937254188681 4 13.01982436754001 2.7929522772546123 67.05078740598904 17.13643594921633 5 36.915954797501925 3.419089845633295 39.68062748302913 19.984327873835646 6 14.703020683967466 27.734555543236006 42.89515746251085 14.667266310285672 7 57.11281563824049 1.1238334668412444 37.41315237716753 4.350198517750738 8 54.303294260987 23.606108890131917 14.710246306523366 7.3803505423577205 9 51.49364830403427 2.8066560441709782 14.17031789001855 31.529377761776207 10 41.269018648335184 20.56711170687892 21.829602378973938 16.334267265811967 11 32.822265880485716 18.735291809258513 30.09260009044486 18.349842219810913 12 21.49087017674122 14.895122580195066 31.948339290319282 31.665667952744432 13 24.723588792311936 18.012231234871354 42.69670200162203 14.56747797119468 14 19.65344419265503 29.86947784910658 27.290678074844994 23.186399883393403 15 11.788976939051873 21.34100079855587 43.827013612823734 23.04300864956852 16 13.839558788537174 23.909958776577522 25.821758841109805 36.428723593775494 17 14.948816430567375 29.123370030360075 35.72248127878569 20.205332260286855 18 14.197102525355081 23.238349617976354 33.075785568438484 29.488762288230085 19 14.194984670468008 27.20260022748253 29.553294572436243 29.049120529613216 20 18.907710113006246 25.46919829226148 41.074798897220504 14.54829269751177 21 19.32380630846681 35.15489616904967 29.234245962683396 16.287051559800126 22 15.092955142587694 20.13195481743468 38.55953476957116 26.215555270406465 23 18.779891341586325 31.52863028358077 30.074162294957386 19.61731607987552 24 19.71735357836499 25.089105629881185 26.659183579399006 28.534357212354816 25 13.981828805068899 39.39994942064211 23.087483602197086 23.530738172091905 26 14.746000680205157 21.99280178497793 33.84269819695802 29.4184993378589 27 21.801696526344248 29.53373555965561 24.96776500282173 23.69680291117841 28 12.419474796903945 29.6262982761907 34.26614459467372 23.688082332231634 29 20.72134137453765 20.665155930180553 27.949330944725233 30.664171750556562 30 15.3236767455796 35.8904147133608 28.59390630859139 20.19200223246821 31 21.58617364665958 26.553166255346028 23.52338796983676 28.337272128157625 32 29.70964209498205 30.752498757317497 20.315086975317023 19.222772172383422 33 18.876191449098602 23.33539720368407 22.027684100765043 35.760727246452284 34 23.232618951811325 22.385975315778392 27.90597720938982 26.47542852302046 35 23.35196630368295 27.66927578083441 22.602619412756216 26.376138502726427 36 16.105788097406375 34.815541068320755 20.986945293316673 28.091725540956197 37 21.04462569406465 29.84692892354419 30.009380851352745 19.099064531038408 38 20.09607586405365 30.219671383669343 20.460596064028984 29.223656688248024 39 26.1214975974805 25.054846212590277 28.87994129804572 19.943714891883506 40 22.69729998417838 20.984827438429598 26.533856401963874 29.784016175428153 41 17.919668518336263 30.513804053574255 28.5164177356643 23.05010969242518 42 25.785506148631054 21.26924289179381 31.27959546480063 21.665655494774505 43 20.69069476852469 28.71437487775617 22.266378804508292 28.32855154921085 44 20.85912652189675 23.021331781900813 30.939866624973995 25.17967507122844 45 18.843925306995523 21.006379726398063 27.065562558318874 33.084132408287545 46 30.51442695207045 26.64099494331001 23.228258662337936 19.6163194422816 47 13.808787602824971 22.211314577444348 41.28234867615382 22.697549143576857 48 20.182783334724476 26.913949064344166 27.46284721919424 25.440420381737116 49 21.833215190251888 18.212306231850295 36.98522111027919 22.969257467618622 50 23.277218484139137 21.734423488754814 28.383615776274794 26.604742250831258 51 19.54481069491802 18.92203677841881 27.246078542517182 34.28707398414599 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 89.0 1 223.5 2 358.0 3 5216.0 4 10074.0 5 6797.0 6 3520.0 7 3511.0 8 3502.0 9 3722.5 10 3943.0 11 4305.5 12 4668.0 13 4667.5 14 4667.0 15 4436.0 16 4205.0 17 4037.0 18 3869.0 19 3629.0 20 3389.0 21 3357.0 22 3325.0 23 3432.0 24 3539.0 25 3791.5 26 4662.0 27 5280.0 28 5816.5 29 6353.0 30 7396.0 31 8439.0 32 9682.5 33 10926.0 34 12668.5 35 14411.0 36 16035.5 37 17660.0 38 18922.5 39 20185.0 40 22192.0 41 24199.0 42 27394.5 43 30590.0 44 36252.5 45 41915.0 46 128907.0 47 215899.0 48 160045.5 49 104192.0 50 93212.0 51 82232.0 52 64680.5 53 47129.0 54 40831.5 55 34534.0 56 30668.5 57 26803.0 58 23647.5 59 20492.0 60 17286.0 61 14080.0 62 11442.0 63 8804.0 64 7422.5 65 6041.0 66 4957.0 67 3873.0 68 3096.5 69 2320.0 70 1783.5 71 1247.0 72 1072.0 73 897.0 74 684.5 75 348.5 76 225.0 77 203.5 78 182.0 79 142.5 80 103.0 81 58.5 82 14.0 83 10.5 84 7.0 85 4.5 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 802699.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.280373771871055 #Duplication Level Percentage of deduplicated Percentage of total 1 77.32959064743449 25.73557680372404 2 9.252833762347278 6.158755321198107 3 3.3346960078469308 3.3293978867013636 4 1.8035055626167953 2.4008535689414217 5 1.2947144428821777 2.1544290293479333 6 0.9583092684370699 1.9135734385580403 7 0.7954429595976947 1.8530847306730227 8 0.726249745470486 1.9335890384787198 9 0.588108361047078 1.7615219466608323 >10 3.77751174911641 19.69469900467222 >50 0.0824347980103707 1.9014586056970688 >100 0.041787224639269614 2.8247532914067217 >500 0.006078141765711944 1.3276074973397478 >1k 0.004938490184640955 3.4547378794691888 >5k 0.0018994193017849827 4.5999115496818765 >10k+ 0.0018994193017849827 18.956050407449744 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC 49182 6.127078768006438 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG 41535 5.174417807920529 No Hit GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC 31420 3.9142941501110626 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAGCTGAT 15976 1.990285275053289 No Hit GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC 11824 1.4730303638100957 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTA 8522 1.061668196920639 No Hit GAACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCT 7967 0.992526463842611 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTC 6990 0.8708120976854339 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6783 0.8450240999428179 No Hit GAATGACTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT 6122 0.7626769187453828 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGT 3328 0.41460123906968865 No Hit CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT 3159 0.39354726989818095 Illumina Single End Adapter 1 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT 3097 0.38582332854532025 No Hit CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC 2772 0.34533492629242096 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATG 2734 0.3406008977213127 No Hit TCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC 2031 0.2530213691558106 No Hit CGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTG 2013 0.2507789345694962 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTAT 1931 0.24056339923184156 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCAAGCTGA 1798 0.22399429923296277 No Hit GAATCTGTCTCTTATACACATCTGACGCCCAGCTGATCGTATGCCGTCTTC 1195 0.14887274059142966 No Hit TGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCTT 1159 0.14438787141880083 Illumina Single End Adapter 1 (95% over 22bp) GAATGATACGGCGACCCTGTCTCTTATACACATCTGACGCCAAGCTGATCG 1066 0.13280195938950964 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCC 1043 0.12993662630699676 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT 870 0.1083843383385304 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT 817 0.10178161427882682 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4418841932031808 0.0 2 0.0 0.0 0.0 2.7032548938020353 0.0 3 0.0 0.0 0.0 3.367140111050344 0.0 4 0.0 0.0 0.0 5.206559370324368 0.0 5 0.0 0.0 0.0 10.654055878978298 0.0 6 0.0 0.0 0.0 11.799067894690289 0.0 7 0.0 0.0 0.0 13.356189555487175 0.0 8 0.0 0.0 0.0 15.170568295214022 0.0 9 0.0 0.0 0.0 15.684459554577744 0.0 10 0.0 0.0 0.0 21.99317552407565 0.0 11 0.0 0.0 0.0 23.546559793895344 0.0 12 0.0 0.0 0.0 31.418003510655925 0.0 13 0.0 0.0 0.0 32.243717757216594 0.0 14 0.0 0.0 0.0 32.6508442143319 0.0 15 0.0 0.0 0.0 34.055231163860924 0.0 16 0.0 0.0 0.0 34.89464917733795 0.0 17 0.0 0.0 0.0 35.693578788562085 0.0 18 0.0 0.0 0.0 36.3405211667138 0.0 19 0.0 0.0 0.0 39.1227595898338 0.0 20 0.0 0.0 0.0 39.87895836421872 0.0 21 0.0 0.0 0.0 40.54446311755714 0.0 22 0.0 0.0 0.0 41.36108304607331 0.0 23 0.0 0.0 0.0 42.09572953248976 0.0 24 1.245796992396901E-4 0.0 0.0 42.681752437713264 0.0 25 1.245796992396901E-4 0.0 0.0 43.17097691662753 0.0 26 1.245796992396901E-4 0.0 0.0 43.68412069779581 0.0 27 1.245796992396901E-4 0.0 0.0 44.20486384061772 0.0 28 1.245796992396901E-4 0.0 0.0 44.64201400524979 0.0 29 1.245796992396901E-4 0.0 0.0 45.12563239769827 0.0 30 1.245796992396901E-4 0.0 0.0 45.66219716232361 0.0 31 1.245796992396901E-4 0.0 0.0 46.137094975825306 0.0 32 1.245796992396901E-4 0.0 0.0 46.55505986677447 0.0 33 1.245796992396901E-4 0.0 0.0 46.986479365241514 0.0 34 1.245796992396901E-4 0.0 0.0 47.429235616339376 0.0 35 1.245796992396901E-4 0.0 0.0 47.8790929102939 0.0 36 1.245796992396901E-4 0.0 0.0 48.31562017642977 0.0 37 1.245796992396901E-4 0.0 0.0 48.756133992941315 0.0 38 2.491593984793802E-4 0.0 0.0 49.199388562836134 0.0 39 2.491593984793802E-4 0.0 0.0 49.82216247933534 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCTAG 20 7.032012E-4 45.000004 26 TCTACGG 20 7.032012E-4 45.000004 2 ACGGACG 40 6.8102963E-9 45.000004 43 CGGTGTA 20 7.032012E-4 45.000004 19 AGACACG 20 7.032012E-4 45.000004 24 GGACGCA 20 7.032012E-4 45.000004 8 CTCGAAT 20 7.032012E-4 45.000004 43 ACCAACG 20 7.032012E-4 45.000004 36 CCAACGC 20 7.032012E-4 45.000004 37 CCCTACG 25 3.889751E-5 45.0 31 GCGCGAC 45 3.8380676E-10 45.0 9 TCGGGTC 70 0.0 45.0 5 TATGCGG 35 1.2113196E-7 45.0 2 CGGTGAT 25 3.889751E-5 45.0 31 TCGTAAC 25 3.889751E-5 45.0 34 CGAGCGT 25 3.889751E-5 45.0 28 CGATCGA 140 0.0 45.0 41 TACCGCG 35 1.2113196E-7 45.0 29 CGGGTCC 60 0.0 44.999996 6 CGAATAC 60 0.0 44.999996 45 >>END_MODULE