##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933810.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 426230 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.63150177134411 28.0 16.0 31.0 16.0 33.0 2 25.529432466039463 28.0 16.0 31.0 16.0 34.0 3 26.593719353400747 30.0 16.0 33.0 16.0 34.0 4 31.063540811299063 33.0 28.0 35.0 19.0 37.0 5 33.23156042512259 35.0 32.0 35.0 28.0 37.0 6 31.38930858925932 35.0 28.0 36.0 17.0 37.0 7 33.15207282453136 35.0 32.0 35.0 28.0 37.0 8 31.97282453135631 35.0 31.0 37.0 17.0 37.0 9 34.13345611524294 35.0 32.0 38.0 28.0 39.0 10 33.56392323393473 35.0 32.0 37.0 27.0 39.0 11 34.25486005208455 35.0 32.0 39.0 27.0 39.0 12 34.425178894024356 37.0 33.0 39.0 27.0 39.0 13 34.64402083382212 35.0 33.0 38.0 29.0 39.0 14 34.5488914435868 36.0 33.0 39.0 27.0 40.0 15 35.111507871337075 37.0 33.0 39.0 27.0 40.0 16 34.65037421110668 36.0 32.0 39.0 27.0 40.0 17 34.110907256645476 36.0 32.0 38.0 27.0 40.0 18 34.44056260704315 36.0 32.0 39.0 27.0 40.0 19 34.14743682988058 36.0 32.0 39.0 27.0 40.0 20 34.04701217652441 36.0 32.0 39.0 25.0 40.0 21 33.95213382446097 36.0 32.0 39.0 25.0 40.0 22 35.20288107359876 37.0 33.0 39.0 28.0 40.0 23 35.541102221805126 37.0 34.0 39.0 29.0 40.0 24 35.84949909673181 38.0 34.0 39.0 30.0 40.0 25 33.84559040893414 36.0 32.0 39.0 24.0 40.0 26 34.83155104051803 37.0 33.0 39.0 27.0 40.0 27 35.00652230016658 37.0 33.0 39.0 27.0 40.0 28 34.9890129742158 37.0 33.0 39.0 27.0 40.0 29 35.513366023039204 38.0 34.0 40.0 29.0 40.0 30 33.244023179973254 36.0 31.0 39.0 22.0 40.0 31 34.146237946648526 36.0 32.0 39.0 25.0 40.0 32 34.5289843511719 36.0 33.0 39.0 26.0 40.0 33 34.86365577270488 37.0 33.0 39.0 27.0 40.0 34 35.200922037397646 38.0 34.0 39.0 27.0 40.0 35 35.4591816624827 38.0 34.0 40.0 29.0 40.0 36 35.64099429885273 38.0 35.0 40.0 30.0 41.0 37 35.927306853107474 38.0 35.0 40.0 30.0 41.0 38 34.98455763320273 37.0 34.0 40.0 27.0 40.0 39 35.1477864064003 37.0 34.0 40.0 28.0 40.0 40 34.406501184806324 37.0 33.0 39.0 25.0 40.0 41 34.050756633742346 36.0 33.0 39.0 25.0 40.0 42 35.11514909790489 37.0 34.0 39.0 29.0 40.0 43 35.288351359594586 38.0 34.0 40.0 29.0 40.0 44 35.888548436290264 38.0 35.0 40.0 30.0 41.0 45 36.09145062524928 38.0 35.0 40.0 31.0 41.0 46 35.72158459047932 38.0 35.0 40.0 30.0 41.0 47 35.22045139947915 38.0 34.0 40.0 26.0 41.0 48 35.54055322243859 38.0 35.0 40.0 28.0 41.0 49 35.884649133097156 38.0 35.0 40.0 30.0 41.0 50 35.54075968373883 38.0 35.0 40.0 28.0 41.0 51 34.9959270816226 37.0 34.0 40.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 5.0 11 8.0 12 10.0 13 9.0 14 14.0 15 20.0 16 67.0 17 177.0 18 520.0 19 1165.0 20 1770.0 21 2195.0 22 2301.0 23 2471.0 24 2981.0 25 3771.0 26 5279.0 27 6799.0 28 9183.0 29 12483.0 30 17381.0 31 23940.0 32 32009.0 33 41845.0 34 51547.0 35 60470.0 36 62164.0 37 54134.0 38 28557.0 39 2950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.861647467329846 3.541749759519508 34.90580203176689 12.69080074138376 2 14.876709757642587 34.02787227553199 33.80334561152429 17.292072355301126 3 13.875841681721138 34.25849893250123 36.76606526992469 15.099594115852943 4 15.017713441099875 3.088473359453816 63.128827159045585 18.76498604040072 5 37.62334889613589 3.7951340825375968 36.45895408582221 22.122562935504305 6 15.470755226051663 28.654482321751168 39.570185111324875 16.3045773408723 7 53.898833962883884 1.5970250803556765 38.594186237477416 5.909954719283016 8 49.1384933017385 24.197499002885767 15.670178072871455 10.993829622504283 9 45.59674354221899 3.8448724866855923 16.362761889120897 34.19562208197452 10 39.130516387865704 18.07380991483471 23.975787720244938 18.819885977054643 11 32.329024235741265 19.36278535063229 28.47570560495507 19.832484808671374 12 21.67538652840016 14.913075100297963 32.240339722684936 31.171198648616944 13 23.04155033667269 19.964338502686342 42.16596673157685 14.82814442906412 14 19.38249302020036 29.82474250991249 25.355324590010085 25.43743987987706 15 11.08486028669967 22.50686249208174 44.8605213147831 21.54775590643549 16 12.762592966238884 24.23761818736363 24.643971564648197 38.35581728174929 17 13.098561809351757 28.444971025033432 35.848250944325834 22.608216221288977 18 12.237993571545879 23.60345353447669 34.35609881988598 29.802454074091457 19 13.182319405016072 27.690448818712905 29.08500105576801 30.042230720503017 20 16.319827323276165 25.93224315510405 42.63965464655233 15.108274875067451 21 19.528658236163572 34.91542125143702 27.631560425122586 17.92436008727682 22 13.608145836754804 21.79902869342843 35.953593130469464 28.6392323393473 23 16.466696384581095 32.76869295920043 28.97590502780189 21.788705628416583 24 21.61978274640452 22.66804307533491 24.75682143443681 30.955352743823756 25 12.837200572460878 38.54843629026582 21.208033221500127 27.406329915773174 26 14.273514299791193 24.846679023062666 30.649414635290807 30.230392041855335 27 20.246111254487015 29.18236632803885 22.381343406142225 28.19017901133191 28 11.806301761959505 31.612275062759544 32.746169908265486 23.83525326701546 29 22.642704643033102 25.16247096637965 23.52603054688783 28.668793843699415 30 14.6732984538864 34.51352556131666 26.247565868193227 24.56561011660371 31 21.934870844379795 28.018675363066887 18.827159045585717 31.219294746967602 32 26.164042887642825 33.810853295169274 20.64308002721535 19.38202378997255 33 15.493043661872699 25.738920301245805 18.514417098749504 40.25361893813199 34 22.229782042559183 28.70234380498792 23.274757759894893 25.79311639255801 35 15.084813363676888 21.688055744551065 26.893226661661547 36.333904230110505 36 14.387068014921523 37.28761466813692 19.580742791450625 28.744574525490936 37 19.546019754592592 20.57175703258804 30.304530417849517 29.577692794969852 38 18.789386012246908 36.083804518687096 19.687492668277688 25.43931680078831 39 27.08115336789996 23.91009548835136 23.265607770452572 25.743143373296107 40 16.483823287896207 27.734556460127163 31.76125566008962 24.02036459188701 41 15.891185510170565 24.723506088262205 20.57105318724632 38.81425521432091 42 17.64258733547615 17.95462543697065 39.10001642305797 25.30277080449523 43 21.59725969546958 21.97921310090796 21.100579499331346 35.32294770429111 44 19.887853975553107 18.267367383806864 30.387349553058208 31.457429087581822 45 17.483049058020317 18.58175163644042 27.721418013748444 36.213781291790816 46 30.836168265959696 23.22595781620252 24.604086995284234 21.333786922553553 47 12.167609037374188 20.800506768646034 44.614175445182184 22.417708748797597 48 19.617342749219905 23.58961124275626 24.912840485184056 31.880205522839784 49 17.59941815451751 14.59306008493067 43.13656945780448 24.67095230274734 50 23.779180254792013 15.343593834314806 29.15444712948408 31.7227787814091 51 18.502920958168126 15.698331886540132 27.230837810571757 38.567909344719986 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 67.0 1 179.5 2 292.0 3 1284.0 4 2276.0 5 1588.5 6 901.0 7 968.5 8 1036.0 9 1264.5 10 1493.0 11 1609.0 12 1725.0 13 1581.0 14 1437.0 15 1318.5 16 1200.0 17 1196.0 18 1192.0 19 1261.0 20 1330.0 21 1366.5 22 1403.0 23 1555.5 24 1708.0 25 1902.0 26 2392.5 27 2689.0 28 2956.0 29 3223.0 30 3650.0 31 4077.0 32 4580.0 33 5083.0 34 5461.5 35 5840.0 36 6504.0 37 7168.0 38 7978.0 39 8788.0 40 10041.5 41 11295.0 42 12419.5 43 13544.0 44 17137.5 45 20731.0 46 74091.5 47 127452.0 48 96409.0 49 65366.0 50 57957.5 51 50549.0 52 37820.0 53 25091.0 54 20477.0 55 15863.0 56 13863.5 57 11864.0 58 10472.0 59 9080.0 60 8242.0 61 7404.0 62 6248.5 63 5093.0 64 4161.5 65 3230.0 66 2600.5 67 1971.0 68 1473.0 69 975.0 70 807.0 71 639.0 72 592.0 73 545.0 74 385.5 75 188.5 76 151.0 77 112.5 78 74.0 79 63.0 80 52.0 81 31.0 82 10.0 83 5.5 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 426230.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.045633291433553 #Duplication Level Percentage of deduplicated Percentage of total 1 73.96044760901135 22.221884869306386 2 10.619963745892658 6.381670725548197 3 4.060136837173628 3.6596814756827905 4 2.2609231586735716 2.7172347250246305 5 1.5945852817574515 2.3955162313800815 6 1.2450689063100768 2.244533026893529 7 0.9938445381212734 2.0902481978760155 8 0.8380878633598519 2.0144704486808944 9 0.7327190084271012 1.9813505969577145 >10 3.4961077794890523 15.780978641631952 >50 0.10534700959941655 2.2307697904249326 >100 0.07154162592199183 4.435084030603402 >500 0.005503201993999371 0.9901934520818846 >1k 0.010220232274570262 6.834035533309418 >5k 0.0031446868537139266 7.220711745393876 >10k+ 0.002358515140285445 16.801636509204304 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGC 28903 6.781080637214649 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCG 23652 5.549116674096146 No Hit GAATCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTC 18575 4.357975740797222 RNA PCR Primer, Index 40 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAGACTCT 9915 2.3262088543743986 No Hit GCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC 9401 2.205616685826901 Illumina PCR Primer Index 8 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAGACTCTCGTA 5775 1.3549022828050583 No Hit GAACTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCT 5478 1.2852215939750837 TruSeq Adapter, Index 19 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTC 4680 1.097998733078385 No Hit GAATGACTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCT 4271 1.002041151490979 No Hit CTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGCT 3343 0.7843183257865473 RNA PCR Primer, Index 40 (96% over 26bp) CCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC 2699 0.6332261924313164 RNA PCR Primer, Index 40 (96% over 25bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACAGACTCTCGT 2176 0.5105224878586678 No Hit TCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC 2131 0.49996480773291413 Illumina PCR Primer Index 8 (95% over 23bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATG 1824 0.4279379677638834 No Hit TGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGCTT 1658 0.3889918588555475 Illumina PCR Primer Index 8 (96% over 25bp) GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTAT 1395 0.3272880838983647 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1363 0.31978040025338433 No Hit GAATGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTT 1222 0.2866996691926894 RNA PCR Primer, Index 40 (95% over 21bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACAGACTC 1113 0.2611266217769749 No Hit CGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTG 1057 0.24798817539825913 RNA PCR Primer, Index 40 (95% over 24bp) TCCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTG 702 0.16469980996175773 RNA PCR Primer, Index 40 (95% over 24bp) GAATGATACGGCGACCCTGTCTCTTATACACATCTGACGCACAGACTCTCG 649 0.15226520892475892 No Hit TGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTG 614 0.1440536799380616 TruSeq Adapter, Index 19 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCACAGCCTCTCGTATGCCGTCTTCTGC 567 0.13302676958449663 Illumina PCR Primer Index 3 (95% over 23bp) GAATGCTACGGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGC 562 0.13185369401496844 No Hit TTCCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCT 553 0.1297421579898177 Illumina PCR Primer Index 8 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCC 545 0.1278652370785726 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGC 473 0.11097294887736668 No Hit TTCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTG 444 0.10416911057410318 TruSeq Adapter, Index 19 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.8941181990943856 0.0 2 0.0 0.0 0.0 4.788259859700162 0.0 3 0.0 0.0 0.0 5.88766628346198 0.0 4 0.0 0.0 0.0 8.693428430659504 0.0 5 0.0 0.0 0.0 15.406001454613707 0.0 6 0.0 0.0 0.0 16.711399948384674 0.0 7 0.0 0.0 0.0 18.76123219857823 0.0 8 0.0 0.0 0.0 21.15031790347934 0.0 9 0.0 0.0 0.0 21.748351828824813 0.0 10 0.0 0.0 0.0 28.863055158013278 0.0 11 0.0 0.0 0.0 30.997114234098962 0.0 12 0.0 0.0 0.0 40.23438049879173 0.0 13 0.0 0.0 0.0 41.287333130000235 0.0 14 0.0 0.0 0.0 41.847828637120806 0.0 15 0.0 0.0 0.0 43.700114961405816 0.0 16 0.0 0.0 0.0 44.8814020599207 0.0 17 0.0 0.0 0.0 45.970954648898484 0.0 18 0.0 0.0 0.0 46.89627665814232 0.0 19 0.0 0.0 0.0 50.25338432301809 0.0 20 0.0 0.0 0.0 51.2441639490416 0.0 21 0.0 0.0 0.0 52.10402834150576 0.0 22 0.0 0.0 0.0 53.060554160899045 0.0 23 0.0 0.0 0.0 53.85097247964714 0.0 24 0.0 0.0 0.0 54.490533280153905 0.0 25 0.0 0.0 0.0 55.03671726532623 0.0 26 0.0 0.0 0.0 55.61363583042019 0.0 27 0.0 0.0 0.0 56.167562114351405 0.0 28 0.0 0.0 0.0 56.63585388170706 0.0 29 0.0 0.0 0.0 57.15740327991929 0.0 30 0.0 0.0 0.0 57.70593341623067 0.0 31 0.0 0.0 0.0 58.25540201299768 0.0 32 0.0 0.0 0.0 58.75395913004716 0.0 33 0.0 0.0 0.0 59.22811627525045 0.0 34 0.0 0.0 0.0 59.67834267883537 0.0 35 0.0 0.0 0.0 60.143584449710254 0.0 36 0.0 0.0 0.0 60.61797621002745 0.0 37 0.0 0.0 0.0 61.08767566806654 0.0 38 0.0 0.0 0.0 61.55854820167515 0.0 39 0.0 0.0 0.0 62.093001431152196 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACCC 30 2.1622764E-6 45.000004 34 ACTGACG 30 2.1622764E-6 45.000004 43 TTTCGCG 70 0.0 45.000004 1 GGCAATT 30 2.1622764E-6 45.000004 8 CGACCAG 35 1.2095188E-7 45.000004 34 CGTTCCC 30 2.1622764E-6 45.000004 34 TGTTGCG 30 2.1622764E-6 45.000004 1 AAACCGA 30 2.1622764E-6 45.000004 30 CGGGAAC 30 2.1622764E-6 45.000004 6 TATACGG 30 2.1622764E-6 45.000004 27 GTTATTC 30 2.1622764E-6 45.000004 42 CCACCGG 120 0.0 45.000004 15 TGCGTTC 30 2.1622764E-6 45.000004 32 CGGGTAC 25 3.8866623E-5 45.0 6 CTCCGGG 45 3.8380676E-10 45.0 3 TTTGTCG 110 0.0 45.0 1 TTGCTAG 20 7.0282863E-4 45.0 2 CGCGCAA 20 7.0282863E-4 45.0 41 CGACACT 20 7.0282863E-4 45.0 12 CGACACC 20 7.0282863E-4 45.0 34 >>END_MODULE