##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933799.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 465626 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.57724010257159 30.0 16.0 33.0 16.0 34.0 2 27.822462663167435 31.0 25.0 33.0 16.0 34.0 3 28.786311331411905 31.0 28.0 34.0 16.0 34.0 4 32.35607332923849 35.0 30.0 35.0 25.0 37.0 5 33.74363115461765 35.0 33.0 37.0 28.0 37.0 6 32.82891634058235 35.0 32.0 37.0 25.0 37.0 7 33.55866081361436 35.0 32.0 35.0 29.0 37.0 8 33.307764171244735 35.0 33.0 37.0 28.0 37.0 9 34.65389175003114 37.0 32.0 39.0 28.0 39.0 10 33.78323590177524 35.0 32.0 39.0 27.0 39.0 11 34.338956587475785 37.0 32.0 39.0 27.0 39.0 12 34.33571149377397 37.0 32.0 39.0 27.0 39.0 13 34.71669107824735 37.0 34.0 39.0 27.0 39.0 14 34.500584159819255 37.0 33.0 39.0 25.0 40.0 15 34.881954615936394 37.0 32.0 39.0 27.0 40.0 16 34.25478173469695 36.0 32.0 39.0 27.0 40.0 17 34.24968107451044 36.0 32.0 38.0 27.0 40.0 18 34.28705226941794 36.0 32.0 39.0 27.0 40.0 19 33.88748910069455 36.0 32.0 39.0 25.0 40.0 20 34.95889190036639 37.0 33.0 39.0 27.0 40.0 21 34.352160317508044 37.0 32.0 39.0 25.0 40.0 22 35.43151799942443 37.0 34.0 39.0 29.0 40.0 23 36.1892763720239 38.0 34.0 39.0 30.0 40.0 24 36.308268868147394 38.0 35.0 40.0 31.0 40.0 25 34.3323761989236 37.0 32.0 39.0 25.0 40.0 26 35.137614738008615 37.0 33.0 39.0 27.0 40.0 27 35.56645247473294 37.0 34.0 39.0 30.0 40.0 28 35.79118434108061 38.0 34.0 40.0 30.0 40.0 29 36.122295576277956 38.0 35.0 40.0 30.0 41.0 30 34.189693015424396 37.0 32.0 39.0 24.0 40.0 31 34.71008921323122 37.0 33.0 39.0 26.0 40.0 32 35.13705849759249 37.0 33.0 39.0 29.0 40.0 33 35.91704501037313 38.0 35.0 39.0 30.0 40.0 34 36.14309123631412 38.0 35.0 40.0 30.0 40.0 35 36.41773225721931 38.0 35.0 40.0 31.0 41.0 36 36.35443252739323 38.0 35.0 40.0 30.0 41.0 37 36.42985357346883 38.0 35.0 40.0 31.0 41.0 38 36.03142865733443 38.0 35.0 40.0 30.0 41.0 39 35.73497184435577 38.0 34.0 40.0 30.0 41.0 40 35.53895615794651 37.0 34.0 40.0 30.0 41.0 41 34.87818764416076 37.0 33.0 39.0 27.0 40.0 42 35.89386546283927 38.0 34.0 40.0 30.0 41.0 43 36.0651445580788 38.0 35.0 40.0 31.0 40.0 44 36.48690794758025 38.0 35.0 40.0 31.0 41.0 45 36.70610962446255 39.0 35.0 40.0 32.0 41.0 46 36.45046668356149 38.0 35.0 40.0 31.0 41.0 47 36.20988089153097 38.0 35.0 40.0 31.0 41.0 48 36.319563340535105 38.0 35.0 40.0 31.0 41.0 49 36.516968554161494 38.0 35.0 40.0 31.0 41.0 50 36.32099796832651 38.0 35.0 40.0 31.0 41.0 51 35.63800560965238 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 10.0 11 10.0 12 9.0 13 17.0 14 10.0 15 38.0 16 53.0 17 118.0 18 211.0 19 422.0 20 539.0 21 831.0 22 1060.0 23 1586.0 24 2140.0 25 3066.0 26 4301.0 27 5915.0 28 7971.0 29 11061.0 30 15725.0 31 22292.0 32 30509.0 33 40410.0 34 51001.0 35 65912.0 36 80080.0 37 77588.0 38 39244.0 39 3493.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.72851601929445 3.8842332687607652 45.1946411927169 16.192609519227876 2 17.453063188052216 17.677921765537146 44.40666973064219 20.46234531576845 3 18.124846980194405 17.40710355521384 46.29745761619841 18.170591848393347 4 18.47147710823708 3.812287114551163 55.173680163908365 22.54255561330338 5 26.674197746689405 4.399668403396718 44.657729594137784 24.268404255776094 6 19.168173598553345 15.677389149231358 46.558611417747294 18.59582583446801 7 67.4116136126419 1.5639161043412526 24.54652446384008 6.477945819176764 8 64.48995545781379 11.695008440250328 12.962764106815342 10.852271995120548 9 60.055495182829134 4.289708908007714 15.828153926112373 19.826641983050774 10 35.83562773556459 22.424220296976543 23.491385790312396 18.248766177146468 11 27.756396764785475 22.322421857885942 27.844020737673585 22.077160639655002 12 21.72730904202085 18.390510839171352 33.80567236365667 26.07650775515113 13 21.57074561987518 22.363441904017385 38.31207879285091 17.75373368325652 14 19.913836426660023 25.65642812042283 28.97432703500234 25.45540841791481 15 13.970010265749766 24.3824442793143 39.76818304819748 21.879362406738455 16 15.400772293643398 25.076993123236246 27.91897359683523 31.603260986285132 17 15.955294592655909 26.5431913166361 32.342051345929995 25.159462744778 18 15.605872524300619 23.37090282759124 34.848139923457886 26.175084724650254 19 16.514541713735916 26.119675447676894 29.966110139897683 27.39967269868951 20 18.947825078496475 25.98415896019552 37.20625566441736 17.861760296890637 21 21.847577240102574 29.16718568121196 28.354086756323742 20.631150322361723 22 17.433519605863935 24.070391258220116 31.075369502562143 27.42071963335381 23 18.083397404784098 28.15693281732549 28.456744253972072 25.30292552391834 24 22.896272974447303 22.256274348940998 25.988883782263017 28.858568894348686 25 16.448823734069833 29.777332021837267 23.577076881445624 30.196767362647275 26 17.62637825207355 21.937778388663865 28.401764506277573 32.03407885298502 27 23.64859350637636 24.882631124550606 25.700454871506317 25.768320497566716 28 18.610859359228222 23.257507097971335 30.865329685197988 27.266303857602452 29 22.261428700287354 21.974503142006675 25.343730805410353 30.42033735229562 30 27.49674631571261 23.932512359705 28.233389028963156 20.337352295619233 31 26.034199121183093 23.586311760941182 25.992749545772785 24.386739572102933 32 23.02341364099084 31.162134416892528 25.15774462766254 20.65670731445409 33 24.009827629900393 24.116565655697922 24.583893511101184 27.289713203300504 34 22.258636759974742 21.923603922461375 30.929114783109192 24.88864453445469 35 20.131822535683146 23.294231851314144 28.071886020110558 28.50205959289215 36 25.566871265779834 24.7685911010124 24.747114637069238 24.917422996138534 37 23.234527281552147 25.40601255084553 32.38156803958542 18.977892128016908 38 27.47763226280319 26.405741947399846 24.20547821642262 21.91114757337434 39 22.54491802433713 27.574491115186866 30.691799856537223 19.188791003938782 40 25.491059348060464 19.949272592166245 32.68825194469381 21.871416115079484 41 19.341703427214117 25.478817763612856 29.904687453020234 25.274791356152793 42 20.506157302212504 20.942559049537614 33.97641025200483 24.574873396245057 43 24.68354430379747 24.346793349168646 24.410793211719277 26.558869135314612 44 22.765051779754568 19.467770270560493 30.099264216345308 27.66791373333963 45 22.5440589657794 17.47110341776447 27.764772585723307 32.22006503073282 46 26.715862086739143 22.510985211306927 29.641386005077035 21.13176669687689 47 17.651935244165916 19.505783611739894 39.69752548182447 23.14475566226972 48 20.49520430560149 22.05439558787525 29.83381512200779 27.61658498451547 49 21.295632116763237 17.214244909004222 38.9132050186201 22.576917955612444 50 24.305343773758338 17.389707619419877 31.09448355547156 27.210465051350223 51 19.528548663519647 16.479535077508558 28.801441500259866 35.19047475871193 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 63.0 1 188.5 2 314.0 3 1031.0 4 1748.0 5 1203.5 6 659.0 7 659.0 8 659.0 9 826.5 10 994.0 11 1159.0 12 1324.0 13 1291.0 14 1258.0 15 1170.0 16 1082.0 17 1041.5 18 1001.0 19 1028.0 20 1055.0 21 1134.0 22 1213.0 23 1325.0 24 1437.0 25 1510.0 26 2194.5 27 2806.0 28 3116.5 29 3427.0 30 3866.0 31 4305.0 32 4947.5 33 5590.0 34 6281.0 35 6972.0 36 7290.0 37 7608.0 38 9022.0 39 10436.0 40 11828.0 41 13220.0 42 15779.5 43 18339.0 44 22461.0 45 26583.0 46 61130.0 47 95677.0 48 84200.0 49 72723.0 50 69308.0 51 65893.0 52 50856.0 53 35819.0 54 30077.5 55 24336.0 56 20872.0 57 17408.0 58 15060.5 59 12713.0 60 10947.5 61 9182.0 62 8117.0 63 7052.0 64 5733.5 65 4415.0 66 3503.5 67 2592.0 68 2082.5 69 1573.0 70 1282.0 71 991.0 72 782.0 73 573.0 74 514.0 75 364.5 76 274.0 77 182.0 78 90.0 79 83.0 80 76.0 81 78.5 82 81.0 83 53.5 84 26.0 85 13.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 465626.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.793705521200792 #Duplication Level Percentage of deduplicated Percentage of total 1 69.78576005769122 22.18747904847411 2 12.86685041503319 8.18169706161811 3 5.295287158605257 5.050704017126749 4 2.587818333252895 3.2910533611922888 5 1.5984547697149922 2.5410400118638647 6 1.0719327049219276 2.0448427655299195 7 0.8171976142048785 1.8187218209060436 8 0.6264454779075337 1.593361843974402 9 0.5490414973611856 1.571045731741861 >10 4.593269203928444 25.477860048464642 >50 0.11249362825392938 2.469797476789936 >100 0.0784046499951629 4.548554524570829 >500 0.006817795651753295 1.616401595964767 >1k 0.006817795651753295 6.314739344729194 >5k 0.0013635591303506592 3.029913035858323 >10k+ 0.0020453386955259886 8.262788311194978 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGC 14777 3.173577076881445 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCG 12317 2.6452560638795943 No Hit GAATCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC 11025 2.367780149733907 No Hit GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 8301 1.7827612719221004 TruSeq Adapter, Index 22 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 5677 1.2192188580534593 TruSeq Adapter, Index 22 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGGAGTTAT 4787 1.0280783289592934 No Hit CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT 4659 1.0005884551120428 Illumina Paired End PCR Primer 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 3903 0.8382263877017176 TruSeq Adapter, Index 22 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCT 3679 0.7901191084690288 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGGAGTTATCGTA 3156 0.6777972020462775 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTC 2782 0.5974752268988416 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCT 2585 0.5551665929308072 No Hit TGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCTT 1490 0.3199993127531538 TruSeq Adapter, Index 22 (95% over 24bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGGAGTTATCGT 1054 0.22636192996095578 No Hit CGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTG 1037 0.22271093109061782 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 988 0.2121874637584671 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATG 978 0.21003981736415064 No Hit TTCCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCT 832 0.17868418000713018 No Hit TGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTG 827 0.17761035680997198 No Hit TCCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTG 789 0.16944930051156937 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTAT 743 0.1595701270977136 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTT 646 0.13873795707284386 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCGGAGTTA 572 0.12284537375490201 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCC 551 0.11833531632683741 No Hit CGTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTC 531 0.11404002353820447 No Hit TTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTG 500 0.10738231971582342 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.131809649804779 0.0 2 0.0 0.0 0.0 5.260230313599327 0.0 3 0.0 0.0 0.0 6.483744464441418 0.0 4 0.0 0.0 0.0 8.86655813893554 0.0 5 0.0 0.0 0.0 13.592668794268361 0.0 6 0.0 0.0 0.0 14.86772645857405 0.0 7 0.0 0.0 0.0 16.622783092009467 0.0 8 0.0 0.0 0.0 18.90916744339878 0.0 9 0.0 0.0 0.0 19.61080352042197 0.0 10 0.0 0.0 0.0 23.84918367960552 0.0 11 0.0 0.0 0.0 26.62286899786524 0.0 12 0.0 0.0 0.0 32.36374257451259 0.0 13 0.0 0.0 0.0 33.41737789556425 0.0 14 0.0 0.0 0.0 33.85807493567799 0.0 15 0.0 0.0 0.0 35.02489122171013 0.0 16 0.0 0.0 0.0 36.17044580843853 0.0 17 0.0 0.0 0.0 37.62075141852044 0.0 18 0.0 0.0 0.0 38.99975516831105 0.0 19 0.0 0.0 0.0 41.148045856545814 0.0 20 0.0 0.0 0.0 42.32323796351578 0.0 21 0.0 0.0 0.0 43.76967781008793 0.0 22 0.0 0.0 0.0 45.28290945952331 0.0 23 0.0 0.0 0.0 46.637215275779276 0.0 24 0.0 0.0 0.0 47.70008547632649 0.0 25 0.0 0.0 0.0 48.56601650251489 0.0 26 0.0 0.0 0.0 49.38319595555231 0.0 27 0.0 0.0 0.0 50.1486171304867 0.0 28 0.0 0.0 0.0 50.948615412369584 0.0 29 0.0 0.0 0.0 51.753768045598825 0.0 30 0.0 0.0 0.0 52.63795406613892 0.0 31 0.0 0.0 0.0 53.37760348434151 0.0 32 0.0 0.0 0.0 54.1043670241782 0.0 33 2.1476463943164687E-4 0.0 0.0 54.80965410007173 0.0 34 2.1476463943164687E-4 0.0 0.0 55.53727669846615 0.0 35 2.1476463943164687E-4 0.0 0.0 56.28014758626022 0.0 36 2.1476463943164687E-4 0.0 0.0 56.97555548873989 0.0 37 2.1476463943164687E-4 0.0 0.0 57.64433257593004 0.0 38 2.1476463943164687E-4 0.0 0.0 58.3668008229781 0.0 39 2.1476463943164687E-4 0.0 0.0 59.08046371980946 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATCCTC 25 3.887218E-5 45.000004 9 GCACCTA 65 0.0 45.000004 9 GCCGATG 25 3.887218E-5 45.000004 9 TCGCTCG 25 3.887218E-5 45.000004 1 GATTGTA 25 3.887218E-5 45.000004 20 TACCGGG 25 3.887218E-5 45.000004 3 GGCTAAT 25 3.887218E-5 45.000004 8 CTATGCG 20 7.028958E-4 45.0 1 TCGTTAG 20 7.028958E-4 45.0 1 CCGGGTC 20 7.028958E-4 45.0 5 TGCCCCG 20 7.028958E-4 45.0 1 GGTAATC 40 6.7993824E-9 45.0 8 CCGGCAG 40 6.7993824E-9 45.0 11 TATGGCG 20 7.028958E-4 45.0 1 CGGTTCG 20 7.028958E-4 45.0 33 CGCATCC 20 7.028958E-4 45.0 45 CACGAGG 20 7.028958E-4 45.0 15 CGATTAT 20 7.028958E-4 45.0 10 CGTTAGG 20 7.028958E-4 45.0 2 CTTTGCG 85 0.0 45.0 1 >>END_MODULE