SRR2933796.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933796.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1208119
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGC	29161	2.4137522876471604	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCG	23315	1.929859558536866	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTC	18385	1.5217871749388927	No Hit
GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	11920	0.9866577712957085	No Hit
CCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	10189	0.8433771838701319	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACACAAAT	8774	0.7262529601802472	No Hit
CTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCT	6253	0.5175814634154418	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACACAAATCGTA	5549	0.4593090581308629	No Hit
GAACTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCT	5154	0.42661360346124844	No Hit
TCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	4531	0.3750458357165147	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTC	4370	0.3617193339397857	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCT	4199	0.34756509913344624	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2118	0.17531385567150257	No Hit
CGCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG	2055	0.17009913758495646	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGACACAAATCGT	1903	0.15751759553487696	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGACACAAATCGTATG	1701	0.140797388336745	No Hit
TGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCTT	1487	0.12308390150308042	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGACACAAATCGTAT	1252	0.1036321753072338	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGA	30	2.1655942E-6	45.000004	22
AGGCACG	70	0.0	45.000004	10
GTCGACG	20	7.0334296E-4	45.0	43
TTCACGA	20	7.0334296E-4	45.0	28
TTAACGC	65	0.0	44.999996	12
TACGGCT	3445	0.0	43.236576	7
ACGGCTG	3525	0.0	42.255318	8
ATACGGC	6750	0.0	41.93333	6
TGATACG	6765	0.0	41.840355	4
GATACGG	6800	0.0	41.625	5
ATGATAC	9520	0.0	41.265755	3
GAATGAT	9845	0.0	41.069073	1
TACGGGA	110	0.0	40.909092	4
AATGATA	9505	0.0	40.83377	2
TTTAGCG	105	0.0	40.714287	1
TATCCGG	50	1.0822987E-9	40.500004	2
TTTGTCG	185	0.0	40.135136	1
TGATACC	2835	0.0	40.07937	4
TACGGCG	3345	0.0	39.41704	7
GATACCT	2895	0.0	39.404144	5

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content