##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933794.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 421958 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.69504310855583 31.0 16.0 33.0 16.0 34.0 2 27.75661795723745 31.0 25.0 33.0 16.0 34.0 3 28.59112992288332 31.0 28.0 34.0 16.0 34.0 4 32.27163129979761 35.0 28.0 35.0 22.0 37.0 5 33.75837168628157 35.0 33.0 37.0 28.0 37.0 6 32.78889368136165 35.0 32.0 37.0 25.0 37.0 7 33.63521487920599 35.0 32.0 35.0 30.0 37.0 8 33.415584015470735 35.0 33.0 37.0 28.0 37.0 9 34.76003061916115 37.0 32.0 39.0 28.0 39.0 10 34.09850269458098 35.0 32.0 39.0 27.0 39.0 11 34.74270662009015 37.0 34.0 39.0 27.0 39.0 12 34.60160963887401 37.0 33.0 39.0 27.0 39.0 13 35.08027102223444 37.0 34.0 39.0 30.0 39.0 14 34.77607250010664 37.0 33.0 39.0 27.0 40.0 15 35.199590954549976 37.0 33.0 39.0 27.0 40.0 16 34.5192128126496 36.0 32.0 39.0 27.0 40.0 17 34.38096919598633 36.0 32.0 38.0 27.0 40.0 18 34.47583408775281 37.0 32.0 39.0 27.0 40.0 19 34.11329326615445 36.0 32.0 39.0 27.0 40.0 20 35.18758502031008 37.0 33.0 39.0 27.0 40.0 21 34.546104114627525 37.0 32.0 39.0 27.0 40.0 22 35.6373477929083 37.0 34.0 39.0 30.0 40.0 23 36.37193512150498 38.0 35.0 39.0 31.0 40.0 24 36.45949359888899 38.0 35.0 40.0 31.0 40.0 25 34.380146839258884 37.0 32.0 39.0 25.0 40.0 26 35.21262779707933 37.0 34.0 39.0 28.0 40.0 27 35.97941027306035 38.0 34.0 39.0 30.0 40.0 28 36.11288801255101 38.0 35.0 40.0 30.0 40.0 29 36.309293815972204 38.0 35.0 40.0 30.0 41.0 30 34.537243043146475 37.0 33.0 39.0 25.0 40.0 31 34.86308352964039 37.0 33.0 39.0 25.0 40.0 32 35.71021760459572 37.0 34.0 39.0 30.0 40.0 33 36.43927357699108 38.0 35.0 40.0 31.0 40.0 34 36.568691670735 38.0 35.0 40.0 31.0 41.0 35 36.88088861924646 39.0 35.0 40.0 32.0 41.0 36 36.75108423113201 39.0 35.0 40.0 31.0 41.0 37 36.98333957408083 39.0 35.0 40.0 32.0 41.0 38 36.57683229136549 38.0 35.0 40.0 31.0 41.0 39 36.4577967475436 38.0 35.0 40.0 31.0 41.0 40 36.04858066442632 38.0 35.0 40.0 30.0 41.0 41 35.5018532650169 37.0 34.0 40.0 30.0 41.0 42 36.55861720834775 38.0 35.0 40.0 31.0 41.0 43 36.61795960735429 38.0 35.0 40.0 31.0 41.0 44 37.08269780404685 39.0 36.0 40.0 33.0 41.0 45 37.3521013939776 39.0 36.0 40.0 33.0 41.0 46 37.16171751690926 39.0 36.0 40.0 33.0 41.0 47 37.05003578555212 39.0 35.0 40.0 32.0 41.0 48 37.12973329099105 39.0 35.0 40.0 33.0 41.0 49 37.39875769626361 39.0 36.0 40.0 33.0 41.0 50 37.2203655340105 39.0 36.0 40.0 33.0 41.0 51 36.6189668166026 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 11.0 11 1.0 12 5.0 13 6.0 14 13.0 15 13.0 16 25.0 17 59.0 18 127.0 19 216.0 20 400.0 21 546.0 22 759.0 23 1051.0 24 1504.0 25 2192.0 26 3063.0 27 4261.0 28 5835.0 29 8229.0 30 12010.0 31 17011.0 32 24439.0 33 33921.0 34 44747.0 35 60494.0 36 76279.0 37 77034.0 38 43501.0 39 4203.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.816161798093646 3.672877395380583 46.71365396556055 15.797306840965215 2 16.996952303309808 18.780305148853678 44.44565572876921 19.7770868190673 3 17.222330184520736 18.808507007806462 45.24905322330658 18.720109584366217 4 17.929509572042715 3.7987193038169678 56.01339469805051 22.2583764260898 5 27.037762052147368 4.280046829305286 44.94452054469876 23.737670573848582 6 18.991463605382528 16.331009247365852 45.201655141032994 19.475872006218626 7 65.64326307357604 1.406775081880187 26.175590935590748 6.774370908953024 8 61.816341910806294 11.734106238061608 14.36351485218908 12.086036998943023 9 57.379881409998156 4.500447911877485 16.923959256608477 21.195711421515888 10 33.03124955564298 25.50561904265353 24.212599358229966 17.25053204347352 11 24.541779039620057 21.243109503789476 32.17642514183876 22.038686314751704 12 19.152617085112738 17.842534091070675 36.92452803359576 26.080320790220828 13 19.48392968020514 23.733878727266696 39.73973713023571 17.042454462292454 14 18.1411420093943 26.360443456457748 29.796567430881748 25.7018471032662 15 11.927016432915124 26.792476976381536 40.31917868603037 20.961327904672977 16 13.243972148886856 27.124263552296675 28.29120433787249 31.34055996094398 17 13.807535347119856 28.566113215059318 32.6368975111267 24.989453926694125 18 13.493760042468681 24.052156849733862 36.35812095042635 26.095962157371112 19 14.973765161461566 25.844278340498345 31.500528488617352 27.68142800942274 20 16.77536626868077 26.697206831011616 39.05246493726864 17.474961963038975 21 20.007204508505584 29.272344640935827 30.14067750818802 20.579773342370565 22 15.981211400186748 24.10524270188028 31.949388327748256 27.96415757018471 23 16.510410988771397 28.549760876674927 29.34960351504178 25.590224619511893 24 21.20211016262282 22.60485640750975 26.98894202740557 29.204091402461856 25 13.783599315571692 31.500054507794616 25.282848055967655 29.433498120666034 26 15.417174221131013 27.56293280373876 29.680679119722814 27.33921385540741 27 19.179397001597316 25.983154721559963 31.04740282208182 23.7900454547609 28 16.759961891941852 24.18510847051128 34.85654970399897 24.19837993354789 29 18.996440404021254 22.953706293043382 32.94332611302547 25.106527189909894 30 22.4972627607487 23.92702591253158 33.55950118258215 20.01621014413757 31 23.54665630228601 22.770512705055953 26.249057963114815 27.433773029543225 32 19.77921973276961 26.624213784310285 33.667568810165946 19.92899767275416 33 20.552045464240518 18.54236677584025 31.797714464472765 29.107873295446467 34 20.81012802222022 22.56433104716583 31.18177638532745 25.443764545286495 35 14.650984221178412 20.506780295669238 37.60871935121505 27.233516131937304 36 22.530441418340214 23.55566193791799 33.11798804620365 20.795908597538144 37 16.816128619436057 18.70683812132961 44.18709918996677 20.289934069267556 38 25.53761274818821 21.78534356499936 30.79216414903853 21.8848795377739 39 21.62964086473061 19.375388071798618 37.265083254731515 21.72988780873926 40 23.916598334431388 19.028434109555928 33.93133913801847 23.123628417994208 41 17.660762445551452 22.04887690244053 30.71774915986899 29.57261149213903 42 18.175268628631287 17.897278876096674 40.12389858706317 23.803553908208876 43 23.61135468458946 18.914915702510676 32.92886969793202 24.54485991496784 44 19.704567753188705 17.85035477464582 34.93925935756639 27.505818114599084 45 21.02223444039454 16.215831907441025 30.41463842372937 32.34729522843506 46 25.653738049758505 19.59389323107987 33.64742462519966 21.104944093961958 47 15.38494352518497 17.343669275141128 44.36105015191085 22.910337047763047 48 18.942880571052097 19.46615539935254 32.51034463145621 29.080619398139152 49 19.30026211139497 13.921053754165106 43.95200470188976 22.826679432550158 50 23.379104081448865 13.443281084847309 34.93167566440262 28.24593916930121 51 18.486437038757412 14.174870484740188 31.025125723413232 36.31356675308917 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 149.0 1 221.5 2 294.0 3 925.0 4 1556.0 5 1105.5 6 655.0 7 725.5 8 796.0 9 845.5 10 895.0 11 1002.0 12 1109.0 13 1028.5 14 948.0 15 929.0 16 910.0 17 887.5 18 865.0 19 822.0 20 779.0 21 1084.5 22 1390.0 23 1441.5 24 1493.0 25 1714.5 26 2353.0 27 2770.0 28 3231.0 29 3692.0 30 4510.5 31 5329.0 32 5643.5 33 5958.0 34 6988.5 35 8019.0 36 9153.5 37 10288.0 38 11336.0 39 12384.0 40 14556.0 41 16728.0 42 21457.0 43 26186.0 44 60742.0 45 95298.0 46 83170.5 47 71043.0 48 66100.5 49 61158.0 50 45362.0 51 29566.0 52 24188.5 53 18811.0 54 15441.5 55 12072.0 56 10393.5 57 8715.0 58 7535.0 59 6355.0 60 5417.5 61 4480.0 62 3942.5 63 3405.0 64 2856.0 65 2307.0 66 1826.0 67 1345.0 68 1152.0 69 959.0 70 757.5 71 556.0 72 471.5 73 387.0 74 284.5 75 144.5 76 107.0 77 72.5 78 38.0 79 35.5 80 33.0 81 20.5 82 8.0 83 5.0 84 2.0 85 1.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 421958.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.89143817203379 #Duplication Level Percentage of deduplicated Percentage of total 1 68.33098380318495 21.108423613903305 2 13.41843170476712 8.29029306746943 3 5.697554392354972 5.280169477296994 4 2.960233062223818 3.6578342646598934 5 1.7794894282968488 2.7485493826009932 6 1.1720597304952445 2.172396641911466 7 0.8742394383397106 1.8904559489917303 8 0.722858746481667 1.7864117019241812 9 0.6441296175663411 1.7908281230243759 >10 4.176316718540239 21.715252571267474 >50 0.12187976042882587 2.6855704438863635 >100 0.0809960433229539 4.875489909664153 >500 0.007713908887900372 1.7057065871640278 >1k 0.009256690665480447 7.999044246706073 >5k 0.0015427817775800743 3.447395528988822 >10k+ 0.0023141726663701116 8.84617849054068 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGC 13838 3.2794733125097757 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCG 12049 2.8554974665725026 No Hit GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 11236 2.6628242621303544 No Hit GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 8162 1.9343157375852575 TruSeq Adapter, Index 19 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 6305 1.4942245436749628 TruSeq Adapter, Index 19 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGTGCTTT 4826 1.1437157252617558 No Hit CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT 4801 1.137790964977557 TruSeq Adapter, Index 13 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 4463 1.0576882059351878 TruSeq Adapter, Index 19 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT 3756 0.8901359850980429 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTA 3351 0.7941548684940206 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTC 2891 0.6851392792647609 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT 2805 0.6647581038871168 No Hit TGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCTT 2246 0.5322804639324292 TruSeq Adapter, Index 19 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1273 0.30168879367140805 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGT 1075 0.25476469222055276 No Hit TGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 1059 0.25097284563866545 No Hit TTCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT 1022 0.24220420041805107 No Hit TCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 978 0.23177662231786103 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATG 909 0.21542428393347204 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 902 0.21376535105389638 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTAT 796 0.188644367448893 No Hit TTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 667 0.15807260438242668 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCATGTGCTT 634 0.15025192080728414 No Hit TTGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT 616 0.14598609340266092 No Hit CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 597 0.14148327558666976 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCC 537 0.1272638509045924 No Hit GAATGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT 522 0.12370899473407307 No Hit CGTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT 468 0.11091151252020344 No Hit TGCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT 467 0.11067452210883548 No Hit TTTCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 443 0.10498675223600454 No Hit TTCCTCGGGCCTTTAAATAGATAAAAGTATCTATCAGATAAAAATCAGGTT 436 0.10332781935642885 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2908867707212566 0.0 2 0.0 0.0 0.0 6.116722517406946 0.0 3 0.0 0.0 0.0 7.659056114589604 0.0 4 0.0 0.0 0.0 10.513368629105267 0.0 5 0.0 0.0 0.0 15.862479204091402 0.0 6 0.0 0.0 0.0 17.308120713435933 0.0 7 0.0 0.0 0.0 19.42349712530631 0.0 8 0.0 0.0 0.0 22.038686314751704 0.0 9 0.0 0.0 0.0 22.924793462856492 0.0 10 0.0 0.0 0.0 27.51648268311064 0.0 11 0.0 0.0 0.0 30.54853800615227 0.0 12 0.0 0.0 0.0 36.665497513970585 0.0 13 0.0 0.0 0.0 37.79214992961385 0.0 14 0.0 0.0 0.0 38.27561036880448 0.0 15 0.0 0.0 0.0 39.604415605344606 0.0 16 0.0 0.0 0.0 40.84671934173544 0.0 17 0.0 0.0 0.0 42.507074163779336 0.0 18 0.0 0.0 0.0 44.09585788159011 0.0 19 0.0 0.0 0.0 46.561269131050956 0.0 20 0.0 0.0 0.0 47.92775584299859 0.0 21 0.0 0.0 0.0 49.356808023547366 0.0 22 0.0 0.0 0.0 51.00246944008646 0.0 23 0.0 0.0 0.0 52.29454116286455 0.0 24 0.0 0.0 0.0 53.34677858933828 0.0 25 0.0 0.0 0.0 54.21866631276099 0.0 26 0.0 0.0 0.0 55.065196062167324 0.0 27 0.0 0.0 0.0 55.845368496390634 0.0 28 0.0 0.0 0.0 56.653268808743995 0.0 29 0.0 0.0 0.0 57.522312647230294 0.0 30 0.0 0.0 0.0 58.460794676247396 0.0 31 0.0 0.0 0.0 59.255897506386894 0.0 32 0.0 0.0 0.0 60.04246868171714 0.0 33 0.0 0.0 0.0 60.781641774773796 0.0 34 0.0 0.0 0.0 61.49427194175723 0.0 35 0.0 2.3699041136795605E-4 0.0 62.199318415576904 0.0 36 0.0 2.3699041136795605E-4 0.0 62.92403509354011 0.0 37 0.0 2.3699041136795605E-4 0.0 63.618890979670965 0.0 38 0.0 2.3699041136795605E-4 0.0 64.29952744111974 0.0 39 0.0 2.3699041136795605E-4 0.0 65.0038629437053 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCAGG 30 2.1622236E-6 45.000004 41 CAGGTCG 20 7.028205E-4 45.000004 24 CGTATGG 20 7.028205E-4 45.000004 2 GCGCGCG 20 7.028205E-4 45.000004 1 GAACTCG 20 7.028205E-4 45.000004 9 CGCATAG 20 7.028205E-4 45.000004 18 GTCTCGG 30 2.1622236E-6 45.000004 2 ATTCGTT 20 7.028205E-4 45.000004 15 ATCACAG 30 2.1622236E-6 45.000004 10 TAGTTTG 30 2.1622236E-6 45.000004 1 ACCTCGT 20 7.028205E-4 45.000004 15 CGTTAGG 20 7.028205E-4 45.000004 2 CGTAGAG 20 7.028205E-4 45.000004 38 TATTCTA 35 1.2094824E-7 45.000004 30 GCAATAC 20 7.028205E-4 45.000004 31 GCCACGC 20 7.028205E-4 45.000004 39 TTACACG 80 0.0 45.000004 34 GTCGGTT 20 7.028205E-4 45.000004 27 TCACGGG 25 3.8865954E-5 45.0 3 TCGTTCA 25 3.8865954E-5 45.0 16 >>END_MODULE