##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933788.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 275119 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.256808871797293 30.0 16.0 33.0 16.0 34.0 2 27.343531344618146 31.0 25.0 33.0 16.0 34.0 3 28.34609023731549 31.0 26.0 34.0 16.0 34.0 4 32.113743507355 35.0 28.0 35.0 25.0 37.0 5 33.65634870728667 35.0 33.0 37.0 28.0 37.0 6 32.47834209923706 35.0 32.0 37.0 23.0 37.0 7 33.440489388228364 35.0 32.0 35.0 29.0 37.0 8 33.053580450641356 35.0 33.0 37.0 27.0 37.0 9 34.616271504330854 37.0 32.0 39.0 28.0 39.0 10 33.83159287435619 35.0 32.0 39.0 27.0 39.0 11 34.26287897237196 35.0 32.0 39.0 27.0 39.0 12 34.430039364783966 37.0 33.0 39.0 27.0 39.0 13 34.72007385894831 37.0 34.0 39.0 28.0 39.0 14 34.485698915741914 37.0 33.0 39.0 26.0 40.0 15 34.949225607827884 37.0 32.0 39.0 27.0 40.0 16 34.45348739999782 36.0 32.0 39.0 27.0 40.0 17 34.36061849599628 36.0 32.0 38.0 27.0 40.0 18 34.36641962205446 36.0 32.0 39.0 27.0 40.0 19 34.0108752939637 36.0 32.0 39.0 25.0 40.0 20 34.833301226014925 37.0 32.0 39.0 27.0 40.0 21 34.42703339282274 37.0 32.0 39.0 26.0 40.0 22 35.48869761812161 37.0 34.0 39.0 29.0 40.0 23 36.13364035199314 38.0 34.0 39.0 30.0 40.0 24 36.29031073826235 38.0 35.0 40.0 31.0 40.0 25 34.270682868140696 37.0 32.0 39.0 25.0 40.0 26 35.13694074200619 37.0 33.0 39.0 27.0 40.0 27 35.52803332376172 37.0 34.0 39.0 30.0 40.0 28 35.704436989084726 38.0 34.0 40.0 30.0 40.0 29 36.138907163809115 38.0 35.0 40.0 30.0 41.0 30 33.67315234498526 37.0 31.0 39.0 23.0 40.0 31 34.588847008021986 37.0 33.0 39.0 25.0 40.0 32 35.161628240870314 37.0 34.0 39.0 29.0 40.0 33 35.758820728484764 38.0 34.0 39.0 30.0 40.0 34 36.09139681374241 38.0 35.0 40.0 30.0 40.0 35 36.301527702557806 38.0 35.0 40.0 30.0 41.0 36 36.30257815708839 38.0 35.0 40.0 30.0 41.0 37 36.486178708122665 38.0 35.0 40.0 31.0 41.0 38 35.97566144104915 38.0 35.0 40.0 30.0 41.0 39 35.97733344480025 38.0 35.0 40.0 30.0 41.0 40 35.59219828510572 38.0 34.0 40.0 30.0 41.0 41 35.04978209429374 37.0 33.0 40.0 27.0 40.0 42 36.11800348212955 38.0 35.0 40.0 30.0 41.0 43 36.236043312166736 38.0 35.0 40.0 31.0 41.0 44 36.626441648886484 38.0 35.0 40.0 31.0 41.0 45 36.895935940447586 39.0 35.0 40.0 32.0 41.0 46 36.65645775100956 39.0 35.0 40.0 32.0 41.0 47 36.40359262719041 38.0 35.0 40.0 31.0 41.0 48 36.55916530664912 38.0 35.0 40.0 31.0 41.0 49 36.84830200749494 39.0 35.0 40.0 32.0 41.0 50 36.65301560415675 39.0 35.0 40.0 31.0 41.0 51 36.06425583111308 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 5.0 11 3.0 12 10.0 13 10.0 14 11.0 15 23.0 16 34.0 17 75.0 18 157.0 19 236.0 20 435.0 21 573.0 22 782.0 23 981.0 24 1311.0 25 1747.0 26 2437.0 27 3367.0 28 4661.0 29 6409.0 30 9227.0 31 13195.0 32 18044.0 33 24027.0 34 30291.0 35 39040.0 36 45834.0 37 44802.0 38 24985.0 39 2403.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.06468837121391 3.5137522308528313 43.752339896553856 15.669219501379402 2 17.43609129140481 21.428545465780264 41.28722480090434 19.848138441910592 3 17.29833272147689 20.98691838804299 44.56108084138137 17.15366804909875 4 17.385567699795363 3.6522377589334067 57.98509008828907 20.977104452982164 5 28.871143032651325 4.484604843722171 43.16713858366743 23.47711353995907 6 17.237268236653957 18.98669303101567 45.212435346159296 18.563603386171078 7 65.10019300738954 1.8631937452520546 26.884002922371774 6.152610324986642 8 62.300677161519204 14.745619168432569 12.596730869187514 10.356972800860719 9 58.350386559997666 4.263609565315372 14.711088656181506 22.674915218505447 10 35.613679898516644 24.038325233807917 22.180583674700767 18.167411192974676 11 30.177486832970462 23.345534114328707 27.09772861925203 19.3792504334488 12 23.039848211137727 17.772672916083586 32.86432416517943 26.323154707599254 13 22.970060228482946 22.306710914186226 38.36485302723548 16.35837583009534 14 19.475935867751772 27.430675453167535 27.17842097419662 25.914967704884067 15 13.172118247013112 24.45923400419455 40.56208404363203 21.80656370516031 16 14.129522134058353 24.82125916421621 27.868304261065212 33.180914440660224 17 15.099647788775039 26.327152977438857 33.49677775798836 25.076421475797744 18 14.936082204427903 22.922080990407785 34.59375761034316 27.548079194821153 19 16.730214925177833 25.23308095769467 30.049542198103367 27.987161919024135 20 18.969609514428303 24.221518688276706 39.14596956226215 17.66290223503284 21 21.954863168301717 29.724228424790727 28.00170108207721 20.319207324830344 22 16.549565824243327 23.459666544295377 32.30674726209386 27.684020369367435 23 18.034014371962677 29.431991247423845 28.28957651052817 24.244417870085307 24 21.930510070187808 22.240921201371044 26.09016461967367 29.73840410876748 25 14.679465976541062 31.91528029688971 24.153911580079892 29.25134214648934 26 15.979630632562635 23.091825719052483 29.308408361472672 31.62013528691221 27 19.749635612225983 29.84817478981822 24.572275996932234 25.829913601023556 28 16.98973898567529 24.371635546799748 32.22023924192804 26.418386225596922 29 19.26511800348213 21.430362861161896 25.333401182760912 33.97111795259506 30 18.464010119257484 33.50768213027817 25.902609416288954 22.125698334175393 31 24.178991636346453 27.500099956745988 20.87533031161061 27.445578095296945 32 23.94418415303923 31.062194904750307 20.303577724548287 24.690043217662176 33 18.077995340198243 31.689559790490662 20.605628836976 29.626816032335096 34 22.81267378843337 27.41104758304588 23.652310454748672 26.123968173772077 35 19.300738952962174 28.69231132709846 21.717147852383878 30.289801867555493 36 22.831938179478698 28.84424558100313 21.56448664032655 26.759329599191624 37 17.93333066782011 29.75803197888914 28.39207761005238 23.91655974323838 38 24.517390656406864 29.04743038466991 21.756767071703518 24.678411887219713 39 19.569349990367805 29.195002889658657 25.621276611211876 25.614370508761663 40 23.603604258520857 28.135097903089207 25.524954655985226 22.736343182404706 41 19.86740283295592 33.96566576645015 21.36530010649937 24.801631294094555 42 24.787092131041476 21.381656664934084 27.74363093788506 26.08762026613938 43 22.97551241462785 26.913808206630584 22.239467285065736 27.87121209367583 44 20.405351865919837 22.965335000490697 28.838793394858225 27.79051973873124 45 20.218887099764103 20.356282190615698 25.577659122052637 33.84717158756756 46 26.077806331078552 25.325041164005395 25.359571676256454 23.2375808286596 47 14.987332754190005 23.71373841864793 38.63019275295418 22.66873607420789 48 20.293036831334803 26.17049349554193 25.518048553535017 28.01842111958825 49 20.437701503712937 19.326909446457716 35.45702041661972 24.77836863320963 50 23.195053776729342 21.12504043704724 27.933003536651412 27.746902249572003 51 19.45376364409583 19.87358197725348 25.391921314049558 35.28073306460114 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 50.0 1 137.0 2 224.0 3 593.0 4 962.0 5 682.5 6 403.0 7 458.0 8 513.0 9 585.5 10 658.0 11 614.5 12 571.0 13 607.0 14 643.0 15 558.5 16 474.0 17 530.5 18 587.0 19 594.5 20 602.0 21 678.5 22 755.0 23 819.5 24 884.0 25 898.0 26 1168.0 27 1424.0 28 2107.0 29 2790.0 30 2990.5 31 3191.0 32 3554.0 33 3917.0 34 4284.0 35 4651.0 36 5075.5 37 5500.0 38 6306.5 39 7113.0 40 7742.5 41 8372.0 42 10110.5 43 11849.0 44 13907.5 45 15966.0 46 38377.0 47 60788.0 48 50620.5 49 40453.0 50 38509.5 51 36566.0 52 28062.5 53 19559.0 54 16012.0 55 12465.0 56 10528.0 57 8591.0 58 7857.5 59 7124.0 60 6344.5 61 5565.0 62 4602.0 63 3639.0 64 3123.5 65 2608.0 66 2274.5 67 1941.0 68 1574.5 69 1208.0 70 948.0 71 688.0 72 569.0 73 450.0 74 342.0 75 198.5 76 163.0 77 109.0 78 55.0 79 32.5 80 10.0 81 5.0 82 0.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 275119.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.739788964048287 #Duplication Level Percentage of deduplicated Percentage of total 1 70.84816308190751 21.778575816283137 2 12.503103900864362 7.686855506162788 3 4.969788698253538 4.58310767340678 4 2.600182095517376 3.1971619553720387 5 1.50760899126178 2.317179111584442 6 0.9695995081056153 1.7883170555286982 7 0.6822669709474879 1.468091989284637 8 0.5391919215806837 1.325971670440791 9 0.411488571732627 1.138416467056074 >10 4.7581322202646295 28.03950290601522 >50 0.11587896560286623 2.4407619975356116 >100 0.07212874389566164 4.119671851089892 >500 0.008277068971633302 1.5873131263198832 >1k 0.010641945820671388 8.4079979935955 >5k 0.0023648768490380865 6.089364965705749 >10k+ 0.0011824384245190432 4.031709914618765 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC 11092 4.031709914618765 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG 9410 3.420338108236799 No Hit GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC 7343 2.6690268574689497 No Hit GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC 4451 1.617845368731349 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAAGAT 3821 1.388853550645357 No Hit CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC 2896 1.0526354050429088 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTA 2306 0.8381827500099956 No Hit CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT 2139 0.7774817442633914 Illumina Single End Adapter 1 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT 2050 0.745132106470291 No Hit TCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC 1851 0.6727997702812237 Illumina Single End Adapter 1 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTC 1850 0.6724362912048968 No Hit GAATGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCT 1768 0.6426310069460851 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGT 788 0.28642151214565337 No Hit CGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG 749 0.27224582816890147 No Hit TGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCTT 692 0.25152752081826407 Illumina Single End Adapter 1 (95% over 23bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATG 626 0.22753790178068398 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTAT 507 0.18428389169777443 No Hit GAATGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTT 503 0.18282997539246654 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 502 0.18246649631613956 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCAGCAAGA 492 0.17883170555286987 No Hit GCTGTCTCTTATACACATCTGACGCCAGCCAGATCGTATGCCGTCTTCTGC 449 0.16320210527081008 Illumina Single End Adapter 1 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG 423 0.15375164928630883 No Hit TGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG 396 0.14393771422548063 No Hit TTCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT 354 0.12867159301974782 No Hit GGGCAAACTGAAGTAGTGATGATAAAAAAGTTAAACAAACAAACAAACAAA 351 0.1275811557907669 No Hit CCTGTCTCTTATACACATCTGACGCCAGCCAGATCGTATGCCGTCTTCTGC 325 0.11813069980626564 Illumina Single End Adapter 1 (95% over 21bp) TTTTTTGGGCATGTTGCTTTTGGAATCAGCCTGACTCTTTGCCCAGTATAT 313 0.11376895089034199 No Hit TTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG 309 0.1123150345850341 No Hit CGTTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC 286 0.10395501582951379 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9468629938317601 0.0 2 0.0 0.0 0.0 4.9524024149549835 0.0 3 0.0 0.0 0.0 6.121351124422523 0.0 4 0.0 0.0 0.0 8.248794158164285 0.0 5 0.0 0.0 0.0 13.065255398572981 0.0 6 0.0 0.0 0.0 14.265463308604641 0.0 7 0.0 0.0 0.0 15.881491281954354 0.0 8 0.0 0.0 0.0 17.917701067538047 0.0 9 0.0 0.0 0.0 18.481820593997508 0.0 10 0.0 0.0 0.0 23.372431565976903 0.0 11 0.0 0.0 0.0 25.509688534779496 0.0 12 0.0 0.0 0.0 31.781519996801386 0.0 13 0.0 0.0 0.0 32.76582133549482 0.0 14 0.0 0.0 0.0 33.190364896644724 0.0 15 0.0 0.0 0.0 34.48871215728467 0.0 16 0.0 0.0 0.0 35.617678168356235 0.0 17 0.0 0.0 0.0 36.91566194991985 0.0 18 0.0 0.0 0.0 38.17329955401117 0.0 19 0.0 0.0 0.0 40.59443368142513 0.0 20 0.0 0.0 0.0 41.68741526394033 0.0 21 0.0 0.0 0.0 42.83746306143887 0.0 22 0.0 0.0 0.0 44.132539010391866 0.0 23 0.0 0.0 0.0 45.23315365350994 0.0 24 0.0 0.0 0.0 46.0749711942832 0.0 25 0.0 0.0 0.0 46.81973982167717 0.0 26 0.0 0.0 0.0 47.57577630043726 0.0 27 3.634790763269712E-4 0.0 0.0 48.27511004329036 0.0 28 3.634790763269712E-4 0.0 0.0 48.962812455700984 0.0 29 3.634790763269712E-4 0.0 0.0 49.67305057084389 0.0 30 3.634790763269712E-4 0.0 0.0 50.452713189565245 0.0 31 7.269581526539424E-4 0.0 0.0 51.15713563948691 0.0 32 7.269581526539424E-4 0.0 0.0 51.84629196820285 0.0 33 7.269581526539424E-4 0.0 0.0 52.49582907759915 0.0 34 7.269581526539424E-4 0.0 0.0 53.094115637233344 0.0 35 7.269581526539424E-4 0.0 0.0 53.72438835558431 0.0 36 7.269581526539424E-4 0.0 0.0 54.39246289787329 0.0 37 7.269581526539424E-4 0.0 0.0 54.994747727347075 0.0 38 7.269581526539424E-4 0.0 0.0 55.620295217705795 0.0 39 7.269581526539424E-4 0.0 0.0 56.2389366056143 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATTGCG 30 2.1594624E-6 45.000004 24 GGAGTTC 35 1.207427E-7 45.000004 8 TTGCGAC 30 2.1594624E-6 45.000004 26 CAGCTAT 35 1.207427E-7 45.000004 16 GGAATGC 25 3.883046E-5 45.0 8 TCGTTTG 55 1.8189894E-12 45.0 1 TGATAAG 20 7.0239237E-4 45.0 26 CCGGGTG 20 7.0239237E-4 45.0 5 ACCGGTG 20 7.0239237E-4 45.0 17 ATTAGCG 20 7.0239237E-4 45.0 15 GGTAAGT 20 7.0239237E-4 45.0 9 GTCGACT 20 7.0239237E-4 45.0 12 TTAGCGT 20 7.0239237E-4 45.0 16 TTTGTCG 50 2.1827873E-11 45.0 1 TTCACGA 20 7.0239237E-4 45.0 32 CCCAGTT 20 7.0239237E-4 45.0 13 CACGATA 20 7.0239237E-4 45.0 34 TATGCGG 20 7.0239237E-4 45.0 2 ACGGGAT 25 3.883046E-5 45.0 5 GACTTTA 20 7.0239237E-4 45.0 41 >>END_MODULE