SRR2933761.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933761.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347227
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC	6748	1.943397258853718	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	5130	1.477419670705331	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	4428	1.275246452608812	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	3043	0.87637194112209	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	2503	0.7208540810478448	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGAGTCTT	2038	0.5869359237616891	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	1925	0.5543923715609673	No Hit
TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1558	0.4486978259179154	No Hit
GAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	1440	0.414714293531321	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTA	1234	0.35538710987336813	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTC	1068	0.3075797677023964	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT	895	0.257756453271203	No Hit
TGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT	669	0.19266934886975956	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	511	0.14716597499618406	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGT	495	0.1425580384013916	No Hit
CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	442	0.1272942484311416	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATG	397	0.11433442675828781	No Hit
TCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	362	0.1042545654571793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGAT	60	0.0	45.000004	5
TTTACGG	30	2.1611104E-6	45.000004	2
TTATCCG	35	1.2086457E-7	45.000004	1
GTAGCTT	30	2.1611104E-6	45.000004	32
TATCCGG	35	1.2086457E-7	45.000004	2
CCATTAG	30	2.1611104E-6	45.000004	21
ATTTACG	20	7.026479E-4	45.0	35
CTTCCCG	20	7.026479E-4	45.0	1
CATGCGC	20	7.026479E-4	45.0	18
CCCTAGA	20	7.026479E-4	45.0	11
ACGCACC	25	3.8851635E-5	45.0	11
ACGCAAA	20	7.026479E-4	45.0	23
GCGCATT	20	7.026479E-4	45.0	10
TATGCAT	25	3.8851635E-5	45.0	34
TCGCTTG	50	2.1827873E-11	45.0	1
TCCACGG	20	7.026479E-4	45.0	2
CGAATTC	20	7.026479E-4	45.0	17
CGAATGT	20	7.026479E-4	45.0	40
AACGAGG	25	3.8851635E-5	45.0	12
AACGACG	20	7.026479E-4	45.0	11