##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933761.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 347227 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.421487960325667 31.0 25.0 33.0 16.0 34.0 2 28.815555817951946 31.0 28.0 33.0 16.0 34.0 3 29.700184605459828 31.0 30.0 34.0 16.0 34.0 4 32.92841858496027 35.0 32.0 37.0 28.0 37.0 5 33.915309005348085 35.0 33.0 37.0 28.0 37.0 6 33.20348648002604 35.0 33.0 37.0 28.0 37.0 7 33.51294110193044 35.0 32.0 35.0 29.0 37.0 8 33.90554881964824 35.0 35.0 37.0 28.0 37.0 9 34.86158910453392 37.0 33.0 39.0 29.0 39.0 10 33.54084791793265 35.0 31.0 39.0 27.0 39.0 11 33.73439565471579 35.0 32.0 39.0 27.0 39.0 12 33.99775939083078 37.0 32.0 39.0 26.0 39.0 13 34.305483156551766 35.0 33.0 39.0 27.0 39.0 14 34.10798699409896 37.0 32.0 39.0 25.0 40.0 15 34.68025239972698 37.0 32.0 39.0 27.0 40.0 16 34.37678521543543 36.0 32.0 39.0 27.0 40.0 17 34.329585544902905 36.0 32.0 38.0 27.0 40.0 18 34.130568763373816 36.0 32.0 39.0 25.0 40.0 19 33.90035337113761 36.0 32.0 39.0 25.0 40.0 20 35.0741935390969 37.0 33.0 39.0 28.0 40.0 21 34.133753999544965 37.0 32.0 39.0 25.0 40.0 22 35.19215959588396 37.0 33.0 39.0 27.0 40.0 23 36.055623554619885 38.0 34.0 39.0 30.0 40.0 24 36.20476230247072 38.0 35.0 40.0 31.0 40.0 25 34.06177802993431 37.0 32.0 39.0 24.0 40.0 26 34.77530261183606 37.0 33.0 39.0 27.0 40.0 27 35.47006713187626 37.0 34.0 39.0 29.0 40.0 28 35.65500378714789 38.0 34.0 40.0 30.0 40.0 29 36.112001658857174 38.0 35.0 40.0 30.0 41.0 30 34.00099070636788 37.0 32.0 39.0 24.0 40.0 31 34.70647155895135 37.0 33.0 39.0 26.0 40.0 32 35.11826557266572 37.0 34.0 39.0 29.0 40.0 33 36.03684333303574 38.0 35.0 40.0 30.0 40.0 34 36.28321530295743 38.0 35.0 40.0 31.0 41.0 35 36.44899446183621 38.0 35.0 40.0 31.0 41.0 36 36.38774058468955 38.0 35.0 40.0 31.0 41.0 37 36.600641655170826 38.0 35.0 40.0 31.0 41.0 38 36.09530940854254 38.0 35.0 40.0 30.0 41.0 39 35.97397955804128 38.0 35.0 40.0 30.0 41.0 40 35.61634607907795 38.0 34.0 40.0 30.0 41.0 41 35.04290276965789 37.0 33.0 39.0 28.0 41.0 42 36.0239324706892 38.0 35.0 40.0 30.0 41.0 43 36.09571548295496 38.0 35.0 40.0 31.0 41.0 44 36.52613996031415 38.0 35.0 40.0 32.0 41.0 45 36.754451698744624 39.0 35.0 40.0 32.0 41.0 46 36.529140879021504 38.0 35.0 40.0 32.0 41.0 47 36.437198144153534 38.0 35.0 40.0 31.0 41.0 48 36.47939820348072 38.0 35.0 40.0 32.0 41.0 49 36.65191358966901 38.0 35.0 40.0 32.0 41.0 50 36.49620277224985 38.0 35.0 40.0 32.0 41.0 51 35.76341125546112 37.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 8.0 10 7.0 11 10.0 12 14.0 13 11.0 14 25.0 15 33.0 16 50.0 17 100.0 18 155.0 19 329.0 20 519.0 21 706.0 22 995.0 23 1340.0 24 1779.0 25 2370.0 26 3382.0 27 4418.0 28 5888.0 29 8160.0 30 11617.0 31 16374.0 32 22691.0 33 29397.0 34 34905.0 35 45046.0 36 56691.0 37 60671.0 38 35836.0 39 3699.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.247725551296416 4.199846210116149 49.066172849461594 17.486255389125844 2 18.67971096717709 11.239045350735974 49.840306197386724 20.24093748470021 3 19.09240928844819 11.527905376022025 48.97891005019771 20.400775285332074 4 18.982106806210346 3.8882344978933085 53.23952342415769 23.89013527173866 5 22.540297845501648 5.270039484256697 48.33783087144721 23.85183179879445 6 21.405017466959656 12.203256083196296 48.698977902064065 17.69274854777998 7 77.16191425205989 1.7006165995155906 16.587995749178493 4.549473399246026 8 76.44365213534662 7.49365688728123 9.128610390321029 6.934080587051122 9 72.04969659617484 3.9775132694174125 11.132486816981398 12.840303317426352 10 37.70818513537254 27.05722769254695 18.499713443943012 16.7348737281375 11 32.60403136852837 23.452957287307726 24.694796199604294 19.24821514455961 12 26.586930163840943 20.54794126032826 30.3864618822845 22.478666693546298 13 25.471233515826825 22.23300607383642 32.910171156044896 19.38558925429186 14 21.373913894944803 25.575776077321176 28.71723685082093 24.333073176913086 15 17.641773249200092 23.56441175369427 37.70559317103797 21.088221826067674 16 20.556581141443495 22.376140104312164 30.53103589294611 26.536242861298227 17 20.044524187347182 24.2786419258871 31.15339532928027 24.52343855748545 18 20.530373502060613 23.07280251823735 30.958134016075938 25.4386899636261 19 21.66046995193346 25.41997022120976 28.55797504226342 24.361584784593365 20 24.44855958782007 25.08387884582708 32.355778784483924 18.11178278186892 21 24.886889556399705 27.7757778052974 27.64301163215994 19.694321006142957 22 21.985617477903503 23.223136449642453 29.445002836760963 25.346243235693077 23 21.189308435115933 27.369127400806963 27.317576110152725 24.12398805392438 24 22.91325271364266 22.969987932966042 27.9284157049999 26.1883436483914 25 18.843868708366575 27.742658261022328 26.169911902012228 27.24356112859887 26 19.206167723132133 26.355381349952623 28.327578212523797 26.110872714391448 27 21.106941568484018 26.184311703870954 26.23672698263672 26.472019745008307 28 18.94927525797245 25.50867300065951 31.943944451324352 23.59810729004369 29 20.669763584053083 25.87989989257748 27.449190299141485 26.001146224227956 30 22.509194273486795 24.939016839128296 27.95577532853148 24.59601355885343 31 25.000071999009293 25.827772609848886 25.807036895172324 23.365118495969494 32 23.314719189463954 29.98125145797994 24.308017521678902 22.396011830877207 33 23.14019359093619 22.857669478467976 26.682256852145713 27.31988007845012 34 22.58464923522652 25.45971367433984 28.747476434724256 23.208160655709378 35 18.40467475167542 24.754123383262247 26.412116569276005 30.42908529578633 36 23.505084570036317 26.352213393543707 27.080555371558084 23.062146664861892 37 19.943725574336096 26.13650436169998 29.581800954418867 24.337969109545053 38 25.21491704274149 26.255734721090242 23.978550055151242 24.55079818101703 39 22.93226045209618 26.94865318653215 29.185806403303893 20.93327995806778 40 24.61070135674933 22.278221451672824 28.363289721133437 24.747787470444408 41 19.315894213295625 23.782712749872562 30.003139156805204 26.898253880026612 42 20.394727368551408 21.70568532976986 29.197902236865218 28.70168506481351 43 22.56362552451278 22.437771256267514 28.741140521906416 26.257462697313283 44 21.20428422904901 22.448715105680144 29.013872769110698 27.333127896160146 45 21.99569733920461 22.102831865033536 26.268694542763093 29.63277625299876 46 24.280369902110145 24.576429828325562 27.47395795833849 23.669242311225798 47 18.275652527021226 22.75053495263905 34.358503226995595 24.615309293344122 48 20.986559224945065 22.856229498282104 29.38769162536323 26.769519651409595 49 20.955167656893043 20.295080739689023 33.73383982236404 25.01591178105389 50 22.413003597070507 21.256987503851946 29.684903535727347 26.6451053633502 51 20.250153357889793 20.261673199376776 27.533861134070797 31.95431230866263 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 40.0 1 187.0 2 334.0 3 717.5 4 1101.0 5 817.0 6 533.0 7 562.0 8 591.0 9 608.0 10 625.0 11 700.5 12 776.0 13 779.0 14 782.0 15 832.5 16 883.0 17 839.0 18 795.0 19 748.0 20 701.0 21 823.0 22 945.0 23 1013.0 24 1081.0 25 1182.5 26 1617.0 27 1950.0 28 2298.0 29 2646.0 30 3263.0 31 3880.0 32 4415.5 33 4951.0 34 5740.0 35 6529.0 36 7656.5 37 8784.0 38 9600.5 39 10417.0 40 11391.5 41 12366.0 42 14508.0 43 16650.0 44 19463.0 45 22276.0 46 37039.0 47 51802.0 48 47412.0 49 43022.0 50 40859.5 51 38697.0 52 32502.5 53 26308.0 54 23031.0 55 19754.0 56 17847.5 57 15941.0 58 14788.0 59 13635.0 60 12333.5 61 11032.0 62 10110.5 63 9189.0 64 7694.5 65 6200.0 66 4957.5 67 3715.0 68 3067.5 69 2420.0 70 1997.0 71 1574.0 72 1410.0 73 1246.0 74 1071.0 75 737.0 76 578.0 77 364.5 78 151.0 79 136.5 80 122.0 81 68.5 82 15.0 83 10.0 84 5.0 85 4.0 86 3.0 87 2.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 347227.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.636134876857977 #Duplication Level Percentage of deduplicated Percentage of total 1 69.1243530535749 20.485786503712955 2 12.986671731858385 7.6974951009366785 3 5.140299531081706 4.570158306317618 4 2.5074552715961844 2.9724513050685233 5 1.4108427292026104 2.0905962706341494 6 0.900611832040491 1.6014392235627692 7 0.6499972679606444 1.3484384692009599 8 0.5012267020510935 1.1883537716695132 9 0.4293376069344555 1.1451516504135264 >10 6.101586305487507 40.950267860687596 >50 0.18571347615901737 3.503217148639449 >100 0.04792605836361739 2.625563456362685 >500 0.0029953786477260867 0.6140024988112894 >1k 0.008986135943178259 5.692320997413386 >5k 0.001996919098484058 3.514757436568914 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC 6748 1.943397258853718 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG 5130 1.477419670705331 No Hit GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC 4428 1.275246452608812 No Hit GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 3043 0.87637194112209 No Hit CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 2503 0.7208540810478448 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGAGTCTT 2038 0.5869359237616891 No Hit CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 1925 0.5543923715609673 No Hit TCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC 1558 0.4486978259179154 No Hit GAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT 1440 0.414714293531321 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTA 1234 0.35538710987336813 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTC 1068 0.3075797677023964 No Hit GAATGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT 895 0.257756453271203 No Hit TGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCTT 669 0.19266934886975956 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 511 0.14716597499618406 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGT 495 0.1425580384013916 No Hit CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG 442 0.1272942484311416 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATG 397 0.11433442675828781 No Hit TCCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG 362 0.1042545654571793 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6379112223415806 0.0 2 0.0 0.0 0.0 2.848280807656087 0.0 3 0.0 0.0 0.0 3.5881426271574504 0.0 4 0.0 0.0 0.0 4.959003764108206 0.0 5 0.0 0.0 0.0 7.731829610024566 0.0 6 0.0 0.0 0.0 8.539658494299118 0.0 7 0.0 0.0 0.0 9.537276767071685 0.0 8 0.0 0.0 0.0 10.956521238267761 0.0 9 0.0 0.0 0.0 11.398307159293488 0.0 10 0.0 0.0 0.0 13.972991731633773 0.0 11 0.0 0.0 0.0 15.909765081632477 0.0 12 0.0 0.0 0.0 19.705840847629936 0.0 13 0.0 0.0 0.0 20.48717409648443 0.0 14 0.0 0.0 0.0 20.756738387279793 0.0 15 0.0 0.0 0.0 21.46319266646891 0.0 16 0.0 0.0 0.0 22.298093178237867 0.0 17 0.0 0.0 0.0 23.388446174980633 0.0 18 0.0 0.0 0.0 24.481967128132318 0.0 19 0.0 0.0 0.0 25.874139971833987 0.0 20 0.0 0.0 0.0 26.8429586408891 0.0 21 0.0 0.0 0.0 27.96671917794411 0.0 22 2.879960371745285E-4 0.0 0.0 29.11150342571286 0.0 23 2.879960371745285E-4 0.0 0.0 30.194656521526262 0.0 24 2.879960371745285E-4 0.0 0.0 31.069588482462482 0.0 25 2.879960371745285E-4 0.0 0.0 31.79908244462556 0.0 26 2.879960371745285E-4 0.0 0.0 32.46953721916786 0.0 27 2.879960371745285E-4 0.0 0.0 33.070584948751105 0.0 28 2.879960371745285E-4 0.0 0.0 33.70705619090681 0.0 29 2.879960371745285E-4 0.0 0.0 34.39680669993981 0.0 30 2.879960371745285E-4 0.0 0.0 35.11679679287613 0.0 31 2.879960371745285E-4 0.0 0.0 35.83131496110614 0.0 32 2.879960371745285E-4 0.0 0.0 36.45799433799791 0.0 33 2.879960371745285E-4 0.0 0.0 37.1206732195365 0.0 34 2.879960371745285E-4 0.0 0.0 37.76693632695614 0.0 35 2.879960371745285E-4 0.0 0.0 38.427311240197334 0.0 36 2.879960371745285E-4 0.0 0.0 39.07155837535676 0.0 37 2.879960371745285E-4 0.0 0.0 39.72559737578011 0.0 38 2.879960371745285E-4 0.0 0.0 40.33902893496185 0.0 39 2.879960371745285E-4 0.0 0.0 40.97838013748931 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGGAT 60 0.0 45.000004 5 TTTACGG 30 2.1611104E-6 45.000004 2 TTATCCG 35 1.2086457E-7 45.000004 1 GTAGCTT 30 2.1611104E-6 45.000004 32 TATCCGG 35 1.2086457E-7 45.000004 2 CCATTAG 30 2.1611104E-6 45.000004 21 ATTTACG 20 7.026479E-4 45.0 35 CTTCCCG 20 7.026479E-4 45.0 1 CATGCGC 20 7.026479E-4 45.0 18 CCCTAGA 20 7.026479E-4 45.0 11 ACGCACC 25 3.8851635E-5 45.0 11 ACGCAAA 20 7.026479E-4 45.0 23 GCGCATT 20 7.026479E-4 45.0 10 TATGCAT 25 3.8851635E-5 45.0 34 TCGCTTG 50 2.1827873E-11 45.0 1 TCCACGG 20 7.026479E-4 45.0 2 CGAATTC 20 7.026479E-4 45.0 17 CGAATGT 20 7.026479E-4 45.0 40 AACGAGG 25 3.8851635E-5 45.0 12 AACGACG 20 7.026479E-4 45.0 11 >>END_MODULE