##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933760.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1384482 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.49633003534896 31.0 25.0 33.0 16.0 34.0 2 28.868329815772253 31.0 28.0 33.0 16.0 34.0 3 29.750341282876917 31.0 30.0 34.0 16.0 34.0 4 33.02188544163088 35.0 32.0 37.0 28.0 37.0 5 33.97476962502943 35.0 33.0 37.0 28.0 37.0 6 33.42297552441996 35.0 33.0 37.0 28.0 37.0 7 33.70160175430233 35.0 33.0 36.0 30.0 37.0 8 33.95390911546701 35.0 35.0 37.0 30.0 37.0 9 34.911512753506365 37.0 34.0 39.0 29.0 39.0 10 33.60711587438479 35.0 31.0 39.0 27.0 39.0 11 33.91424446110531 35.0 32.0 39.0 27.0 39.0 12 33.978838294755725 37.0 32.0 39.0 26.0 39.0 13 34.319843089328714 37.0 33.0 39.0 27.0 39.0 14 34.18763335312413 37.0 32.0 39.0 25.0 40.0 15 34.58142395495211 37.0 32.0 39.0 27.0 40.0 16 34.204984246815776 36.0 32.0 39.0 27.0 40.0 17 34.22261250055978 36.0 32.0 38.0 27.0 40.0 18 34.2719638102915 36.0 32.0 39.0 25.0 40.0 19 33.896138772479524 36.0 32.0 39.0 25.0 40.0 20 35.04051262493842 37.0 33.0 39.0 27.0 40.0 21 34.20391525494734 37.0 32.0 39.0 25.0 40.0 22 35.12955459153676 37.0 33.0 39.0 27.0 40.0 23 36.16684073899119 38.0 34.0 39.0 30.0 40.0 24 36.270638404833 38.0 35.0 40.0 31.0 40.0 25 34.08985887862753 37.0 32.0 39.0 24.0 40.0 26 34.84907279401249 37.0 33.0 39.0 27.0 40.0 27 35.49947778302643 37.0 34.0 39.0 30.0 40.0 28 35.77036610082327 38.0 34.0 40.0 30.0 40.0 29 36.25831249521482 38.0 35.0 40.0 30.0 41.0 30 34.05877432859366 37.0 32.0 39.0 24.0 40.0 31 34.745377693606706 37.0 33.0 39.0 26.0 40.0 32 35.082324652830444 37.0 33.0 39.0 29.0 40.0 33 35.989526768856514 38.0 35.0 40.0 30.0 40.0 34 36.26418111611419 38.0 35.0 40.0 31.0 41.0 35 36.317848841660634 38.0 35.0 40.0 31.0 41.0 36 36.235118260836906 38.0 35.0 40.0 30.0 41.0 37 36.38121477924596 38.0 35.0 40.0 31.0 41.0 38 35.95943537005176 38.0 34.0 40.0 30.0 41.0 39 35.89628756459094 38.0 34.0 40.0 30.0 41.0 40 35.376064838690574 37.0 34.0 40.0 28.0 41.0 41 34.659032042308965 37.0 33.0 39.0 26.0 40.0 42 35.584070432118295 37.0 34.0 40.0 30.0 41.0 43 35.70224892775782 38.0 34.0 40.0 30.0 41.0 44 36.083660892665996 38.0 35.0 40.0 31.0 41.0 45 36.27897365223961 38.0 35.0 40.0 31.0 41.0 46 35.9658998816886 37.0 35.0 40.0 31.0 41.0 47 35.77945036482959 37.0 34.0 40.0 30.0 41.0 48 35.62983772992354 37.0 34.0 40.0 30.0 41.0 49 35.648739384116226 37.0 34.0 39.0 31.0 41.0 50 35.44553414201123 36.0 34.0 39.0 30.0 41.0 51 34.505979131545224 35.0 33.0 39.0 28.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 15.0 10 39.0 11 42.0 12 42.0 13 61.0 14 57.0 15 127.0 16 201.0 17 401.0 18 716.0 19 1164.0 20 1894.0 21 2518.0 22 3618.0 23 5085.0 24 7197.0 25 10247.0 26 14162.0 27 18836.0 28 25598.0 29 34681.0 30 49244.0 31 69127.0 32 95081.0 33 119966.0 34 145146.0 35 187461.0 36 231096.0 37 226527.0 38 121366.0 39 12759.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.357609560832138 3.6616582953046697 50.462483441460414 17.518248702402776 2 19.460491360667746 10.869119280712932 48.10051701647259 21.569872342146738 3 19.619901161589677 10.890065742999909 49.17239805212347 20.31763504328695 4 19.299420288598913 3.923200157170696 52.239032360117356 24.538347194113033 5 23.093185754672145 4.678139549665507 47.04373187950439 25.184942816157957 6 20.853358873571487 10.840660983674761 49.048091632827294 19.257888509926456 7 74.95763758575409 1.7487406842414708 17.949673596334225 5.34394813367021 8 74.16376666507762 6.862422191115522 10.842683400723159 8.131127743083695 9 69.13834921653009 3.9790333135425375 13.588042314742987 13.294575155184393 10 38.52357777132531 21.82787497417807 22.20967842124347 17.43886883325316 11 30.484397774763412 22.62817429190123 26.51251515007057 20.374912783264786 12 25.312282861026723 19.0256716952622 33.00165693739608 22.660388506314995 13 25.283752334808252 21.46196194677865 35.3764801564773 17.8778055619358 14 20.60272361793075 23.272458580176558 33.35319635791581 22.77162144397688 15 17.196251016625713 23.1317561369523 38.34473832090269 21.327254525519294 16 21.517145040527794 23.748882253434857 28.44717374440404 26.286798961633306 17 21.610392912294994 24.152137767049336 30.64366311732475 23.59380620333092 18 22.213000963537265 21.266870930788556 33.38194357167518 23.138184533999 19 22.00815900820668 24.142097910987648 29.18701723821617 24.662725842589502 20 21.201720210158022 27.498660148705433 33.195520057321076 18.104099583815465 21 23.138617909080796 26.470044392054216 31.218824080053043 19.172513618811944 22 19.664466565834733 22.652948900744104 32.78403041715241 24.898554116268755 23 19.30245391417151 25.425610444917307 31.123337103696546 24.148598537214642 24 22.607372287974854 24.057517540856434 27.861828467253456 25.47328170391526 25 21.131946821988297 26.943506668920218 24.84633241891191 27.078214090179575 26 21.325232108470892 23.510959333526905 27.981801135731633 27.182007422270566 27 21.30016858290682 25.836305564102673 28.885243722923086 23.97828213006742 28 20.218247691194254 23.542451256137674 29.737620279642496 26.501680773025576 29 26.05487106369025 23.072167063204866 25.938076479145266 24.93488539395962 30 25.215856905326323 24.118334510668973 27.48580335461205 23.180005229392652 31 28.86603076096331 23.207307859546024 25.581625474365143 22.345035905125528 32 27.78273751482504 25.172013792884268 25.414631609511716 21.630617082778976 33 23.74967677441816 24.15676043458853 24.100710590675792 27.992852200317518 34 27.347340015977096 21.561349298871345 28.656277221372328 22.435033463779234 35 22.16077926618042 25.49957312554443 27.147120728185705 25.19252688008945 36 27.913905706249704 26.8654991541963 23.895724176984608 21.324870962569396 37 24.376553830241203 26.802154163073265 28.647537490556036 20.1737545161295 38 25.647354028438073 25.090033673243855 25.461725035067268 23.800887263250807 39 26.93180554171163 21.95702074855433 26.58640560151739 24.524768108216648 40 25.13293780634201 20.675964006754874 29.30641207325195 24.88468611365117 41 23.95885248056674 24.198508900801887 25.87855963457813 25.96407898405324 42 21.81588493024828 22.71701618367014 31.965168200092165 23.501930685989418 43 24.209704423748377 23.363900722436263 27.709280438460016 24.717114415355347 44 24.24574678471804 20.837179537184305 28.168369108446335 26.74870456965132 45 24.124257303453568 18.13241342249303 26.4847069156551 31.258622358398302 46 26.624253691994547 20.903847070601135 28.4886332938962 23.983265943508115 47 19.286780182046424 22.24572078221313 35.25657971717942 23.21091931856102 48 22.053518933435033 24.423575026616454 28.101990491750705 25.420915548197808 49 23.897024302230005 19.546588543585255 33.53716408013972 23.019223074045023 50 24.464312284305613 19.746157768753946 28.181875965162423 27.607653981778025 51 21.648602148673657 19.18825958011733 26.194562298390302 32.96857597281871 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 209.0 1 763.5 2 1318.0 3 3405.0 4 5492.0 5 3827.5 6 2163.0 7 2128.5 8 2094.0 9 2322.5 10 2551.0 11 2580.0 12 2609.0 13 2609.5 14 2610.0 15 2439.0 16 2268.0 17 2428.5 18 2589.0 19 2788.5 20 2988.0 21 3160.5 22 3333.0 23 3670.5 24 4008.0 25 5190.0 26 7154.5 27 7937.0 28 9768.0 29 11599.0 30 12990.5 31 14382.0 32 16455.0 33 18528.0 34 22080.5 35 25633.0 36 28327.5 37 31022.0 38 33847.5 39 36673.0 40 39697.0 41 42721.0 42 46946.5 43 51172.0 44 58394.0 45 65616.0 46 75285.0 47 84954.0 48 146496.5 49 208039.0 50 199569.0 51 191099.0 52 187529.0 53 183959.0 54 149541.5 55 115124.0 56 97305.5 57 79487.0 58 67910.0 59 56333.0 60 46438.0 61 36543.0 62 31126.5 63 25710.0 64 22662.5 65 19615.0 66 16519.5 67 13424.0 68 11002.5 69 8581.0 70 7161.5 71 5742.0 72 4721.0 73 3700.0 74 3207.5 75 2261.0 76 1807.0 77 1318.5 78 830.0 79 631.5 80 433.0 81 383.0 82 333.0 83 225.5 84 118.0 85 71.5 86 25.0 87 22.0 88 19.0 89 11.5 90 4.0 91 2.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1384482.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.10981216013441 #Duplication Level Percentage of deduplicated Percentage of total 1 69.14670473670014 22.202877005877177 2 12.825325558318301 8.236375891403432 3 5.155112183373696 4.965890516176491 4 2.6137067185270797 3.357025270943433 5 1.644613721265096 2.640411883290094 6 1.0772056707492432 2.0753323047353875 7 0.7983451862364879 1.7944299778300803 8 0.6785059772243711 1.7429359582562394 9 0.5724401678660741 1.6542851636785902 >10 5.26045414645284 30.292391735616413 >50 0.13315033159829404 2.915210459515962 >100 0.08100981821161682 4.987235555286091 >500 0.007054225216572744 1.5400477540707602 >1k 0.00432355739080265 3.14096089596431 >5k 9.102226085900315E-4 2.1325536722640415 >10k+ 0.0011377782607375393 6.322035955091539 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGC 21705 1.5677343584098602 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCG 19398 1.4011016394579345 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTC 16855 1.2174228339552264 No Hit CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC 15309 1.1057565212115432 TruSeq Adapter, Index 14 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC 13256 0.9574700140557986 TruSeq Adapter, Index 14 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT 9040 0.6529517899113171 Illumina PCR Primer Index 8 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC 7345 0.5305233293029451 TruSeq Adapter, Index 14 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGGCGTAT 7259 0.5243116197971516 No Hit GAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT 5542 0.4002941172221813 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTA 4904 0.3542119001908295 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTC 4609 0.3329042920023518 No Hit GAATGACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT 3951 0.2853774913650015 No Hit CGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG 3594 0.2595916739979285 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3121 0.2254272717160642 No Hit TGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCTT 2512 0.18143970091341022 TruSeq Adapter, Index 14 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCC 2258 0.1630934891172294 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT 2023 0.14611963174674716 No Hit TCCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG 1866 0.134779650439659 No Hit TGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG 1677 0.1211283353629733 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGT 1663 0.12011712683877437 No Hit TTCCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT 1622 0.11715573044647745 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1565 0.11303866716938177 No Hit CGTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTC 1420 0.10256543602589273 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7264810954566401 0.0 2 0.0 0.0 0.0 3.5147441425746235 0.0 3 0.0 0.0 0.0 4.48384305465871 0.0 4 0.0 0.0 0.0 6.005784112758418 0.0 5 0.0 0.0 0.0 9.084625152222998 0.0 6 0.0 0.0 0.0 10.290130171428736 0.0 7 0.0 0.0 0.0 11.674908016138888 0.0 8 0.0 0.0 0.0 13.531486866568146 0.0 9 0.0 0.0 0.0 14.20574626466794 0.0 10 0.0 0.0 0.0 16.98678639375593 0.0 11 0.0 0.0 0.0 19.603432908481295 0.0 12 0.0 0.0 0.0 23.350827240801976 0.0 13 7.222918029992445E-5 0.0 0.0 24.231084261117154 0.0 14 7.222918029992445E-5 0.0 0.0 24.596636142615072 0.0 15 7.222918029992445E-5 0.0 0.0 25.39447966820804 0.0 16 7.222918029992445E-5 0.0 0.0 26.360761642260428 0.0 17 7.222918029992445E-5 0.0 0.0 27.675043806997852 0.0 18 7.222918029992445E-5 0.0 0.0 28.95747290322301 0.0 19 7.222918029992445E-5 0.0 0.0 30.455289415102545 0.0 20 7.222918029992445E-5 0.0 0.0 31.52695376321252 0.0 21 7.222918029992445E-5 0.0 0.0 32.86355474466262 0.0 22 7.222918029992445E-5 0.0 0.0 34.30120434935232 0.0 23 7.222918029992445E-5 0.0 0.0 35.637733101622125 0.0 24 7.222918029992445E-5 0.0 0.0 36.64366889565917 0.0 25 7.222918029992445E-5 0.0 0.0 37.59167688709568 0.0 26 7.222918029992445E-5 0.0 0.0 38.44470350643779 0.0 27 7.222918029992445E-5 0.0 0.0 39.36995930607982 0.0 28 7.222918029992445E-5 0.0 0.0 40.21309052772084 0.0 29 1.444583605998489E-4 0.0 0.0 41.17301633390683 0.0 30 1.444583605998489E-4 0.0 0.0 42.231823887923426 0.0 31 1.444583605998489E-4 0.0 0.0 43.07769981841584 0.0 32 1.444583605998489E-4 0.0 0.0 43.86875380106061 0.0 33 1.444583605998489E-4 0.0 0.0 44.71824119056802 0.0 34 1.444583605998489E-4 0.0 0.0 45.61453308890979 0.0 35 1.444583605998489E-4 0.0 0.0 46.5600852882161 0.0 36 1.444583605998489E-4 0.0 0.0 47.373096941672046 0.0 37 1.444583605998489E-4 0.0 0.0 48.16682340398792 0.0 38 1.444583605998489E-4 0.0 0.0 49.11158108231093 0.0 39 1.444583605998489E-4 0.0 0.0 50.656418790565716 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATCG 30 2.1658252E-6 44.999996 9 TACGGCT 2755 0.0 41.161522 7 TCGTTCA 115 0.0 41.086956 16 CGTTTTT 2115 0.0 40.638294 1 TTTAGCG 90 0.0 40.0 1 ACGGCTG 2860 0.0 39.886364 8 TTTGTCG 300 0.0 39.750004 1 TGATACC 2330 0.0 39.592274 4 GCCGATG 120 0.0 39.374996 9 TTGGGAC 2230 0.0 39.24888 5 ATGATAC 8230 0.0 39.204132 3 TTTACGG 75 0.0 39.000004 2 GAATGAT 8550 0.0 38.94737 1 TTTTGCG 1205 0.0 38.838173 1 AATGATA 8240 0.0 38.774277 2 GATACCT 2380 0.0 38.760506 5 ATACGGC 6015 0.0 38.753117 6 CGGGCTA 105 0.0 38.57143 6 GTTGATC 140 0.0 38.571426 16 AGGCACG 345 0.0 38.47826 10 >>END_MODULE